View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445-Insertion-13 (Length: 396)
Name: NF4445-Insertion-13
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445-Insertion-13 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 7 - 396
Target Start/End: Complemental strand, 38872393 - 38872005
Alignment:
| Q |
7 |
aaatattatatagtttaataatgatatattatgttgcatcatttcttcacattgatgttgtgtccaacatgtgttggtgacatacatcatcaagacaccg |
106 |
Q |
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| T |
38872393 |
aaatattatatagtttaataatgatatactatgttgcatcatttcttcacattgatgttgtgtccgacatgtgttggtgacatacatcatcaagacac-g |
38872295 |
T |
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| Q |
107 |
acatatttgattacatccctattttgctagattctacatccgtatgattcataggctatgaacaataggaacaacacaatcaagatgcaaataagaaagt |
206 |
Q |
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| T |
38872294 |
acatatttgattacatctctattttgctagattctacatccctatgattcataggctatgaacaataggaacaacacaatcatgatgcaaataagaaagt |
38872195 |
T |
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| Q |
207 |
ccctcaacagcatcaacaacaattttaagtttagttgccaatccaacaaattcttcttgttactatgcagtgaagaatggttaggcattataatggagcc |
306 |
Q |
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| T |
38872194 |
ccctcaacagcatcaacagcaattttaagtctagttgtcaatccaacaaattcttcttgttactatgcactgaagaatggttgggcattataacggagcc |
38872095 |
T |
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| Q |
307 |
taatcttagttaggcatgacaaagtatatatagtttttctgtgacaacaataaatctcgtcgtcatctacttcgcccctccgcggcacct |
396 |
Q |
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| T |
38872094 |
taatcttagttcggcatgacaaagtatatatagtttttctgtgacaacaataaatctcgtcgtcatctacttcgtccctccgcggcacct |
38872005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 7 - 385
Target Start/End: Complemental strand, 38875545 - 38875183
Alignment:
| Q |
7 |
aaatattatatagtttaataatgatatattatgttgcatcatttcttcacattgatgttgtgtccaacatgtgttggtgacatacatcatcaagacaccg |
106 |
Q |
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| T |
38875545 |
aaatattatatagtttaataatgatatactatgtagcatcaattcttcacattgaagttgtgtccgacatgtgttggtgacatatatcgtcaagacaccg |
38875446 |
T |
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| Q |
107 |
acatatttgattacatccctattttgctagattctacatccgtatgattcataggctatgaacaataggaacaacacaatcaagatgcaaataagaaagt |
206 |
Q |
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| T |
38875445 |
acacatttgattacattcctattttgctagattttacatcc--------------ctatgaacaataagaacaacactatcataatgcaaataagaaagt |
38875360 |
T |
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| Q |
207 |
ccctcaacagcatcaacaacaattttaagtttagtt-gccaatccaacaaattcttcttgttactatgcagtgaagaatggttaggcattataatggagc |
305 |
Q |
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| T |
38875359 |
cccccagcagcatctacaacaattttaagtctagttagccaatccaacaaattcttcttgctactatgcaaagaagaatggttaggcattatagaggagc |
38875260 |
T |
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| Q |
306 |
ctaatcttagttaggcatgacaaagtatatatagtttttctgtgacaacaataaatctcgtcgtcatctacttcgcccct |
385 |
Q |
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| T |
38875259 |
ctaatcttagttaggcatggcaaagtacatatagtttttttgtaacaacaataaatctcgtcg---tctacttcgcccct |
38875183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 162 - 275
Target Start/End: Complemental strand, 38868330 - 38868216
Alignment:
| Q |
162 |
ctatgaacaataggaacaacacaatcaagatgcaaataagaaagtccctcaacagcatcaacaacaattttaagtttagtt-gccaatccaacaaattct |
260 |
Q |
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| T |
38868330 |
ctatgaacaataggaacaacacaatcatggtgcaaataagaaagtccctcagcagcatcaacagcaattttaagtcttgttggccaatccaacaaattct |
38868231 |
T |
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| Q |
261 |
tcttgttactatgca |
275 |
Q |
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| T |
38868230 |
tcttgctactatgca |
38868216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 301 - 370
Target Start/End: Original strand, 38786159 - 38786228
Alignment:
| Q |
301 |
ggagcctaatcttagttaggcatgacaaagtatatatagtttttctgtgacaacaataaatctcgtcgtc |
370 |
Q |
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| T |
38786159 |
ggagcctaatcttaattaggcatgacaaagtacatatagtttttctataacaacaataaatcccgtcgtc |
38786228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 38782527 - 38782576
Alignment:
| Q |
292 |
cattataatggagcctaatcttagttaggcatgacaaagtatatatagtt |
341 |
Q |
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| T |
38782527 |
cattatagcggagcctaatcttagttaggcatgacaaagtacatatagtt |
38782576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 348
Target Start/End: Original strand, 38778189 - 38778245
Alignment:
| Q |
292 |
cattataatggagcctaatcttagttaggcatgacaaagtatatatagtttttctgt |
348 |
Q |
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| T |
38778189 |
cattatagaggagcctaatcttagttaggcatgatcaagtacatatggtttttctgt |
38778245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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