View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445-Insertion-14 (Length: 355)
Name: NF4445-Insertion-14
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445-Insertion-14 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 8 - 290
Target Start/End: Complemental strand, 18079458 - 18079176
Alignment:
| Q |
8 |
agaacctcaattacgtaaacacatgtaataccaaattcaaacatatatacatgcgcgcgcacacaaacacataatcgaaatataatgagcaaagagatca |
107 |
Q |
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| T |
18079458 |
agaacctcaattacgtaaacacatgtaataccaaattcaaacatatatacatgcgcgcgcacacaaacacataattgaaatataatgagcaaagagatca |
18079359 |
T |
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| Q |
108 |
tgtgatgtcacctttggattccgcatgtttattttttgcttcggctgttcaatgcttttagcttcacttttctatcagtccttaaagaataacctttact |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18079358 |
tgtgatgtcacctttggattccgcatgtttattttttgcttcggctgttcaatgcttttagcttcacttttctatcagtccttaaagaataacctttact |
18079259 |
T |
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| Q |
208 |
atcatcagataaaacatcactttccgaattcttttcactgatcagttcattctcatcattcttaacttttttaccactttccc |
290 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
18079258 |
atcatcagataaaacatcactctccgaattcttttcactgatcagttcattctcatcattcttaacttttttaccattttccc |
18079176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 355
Target Start/End: Complemental strand, 51479397 - 51479055
Alignment:
| Q |
8 |
agaacctcaattacgtaaacacatgtaataccaaattcaaacatatatacatgcgcgcgcacacaaacacataatcgaaatataatgagcaaagagatca |
107 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||||||||||| | ||| | ||||| ||| |||||||||||||||||||||||| |
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| T |
51479397 |
agaaccgcaattacgtaaacacatgtaacgccaaattcaaacatatatatgtat------acatacacacagaattgaaatataatgagcaaagagatca |
51479304 |
T |
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| Q |
108 |
tgtgatgtcacctttggattccgcatgtttattttttgcttcggctgttcaatgcttttagctt-cacttttctatcagtccttaaagaataacctttac |
206 |
Q |
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|||||||||||||| |||||||| |||| |||||||||||| ||||||||||||||||||||| ||||||| || ||||||||||||||||||||| |
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| T |
51479303 |
tgtgatgtcaccttaggattccgtttgttaattttttgcttcagctgttcaatgcttttagctttcacttttttaaaggtccttaaagaataacctttat |
51479204 |
T |
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| Q |
207 |
tatcatcagataaaacatcactttccgaattcttttcactgatcagttcattctcatcattcttaacttttttaccactttccccctcttgttcatcttc |
306 |
Q |
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|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| | || ||||||||||||||||| |
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| T |
51479203 |
tatcatcagataaaacattactttccaaattcttttcactgatcagttcattctcatcaatcttaacttttttaccattatctccctcttgttcatcttc |
51479104 |
T |
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| Q |
307 |
atcactttcttcagaactataacttaccttcctttttctaccacgtttc |
355 |
Q |
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||| ||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
51479103 |
gtcattttcttcagaactataacttaccttactttttctaccaggtttc |
51479055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 188 - 355
Target Start/End: Complemental strand, 51496194 - 51496027
Alignment:
| Q |
188 |
cttaaagaataacctttactatcatcagataaaacatcactttccgaattcttttcactgatcagttcattctcatcattcttaacttttttaccacttt |
287 |
Q |
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||||||||||| |||||| ||||||||||||||||| |||| || ||||||||||||||||||||||||||||| ||| ||||||| ||| ||||| ||| |
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| T |
51496194 |
cttaaagaatagcctttattatcatcagataaaacaccactctctgaattcttttcactgatcagttcattctcctcaatcttaacatttctaccatttt |
51496095 |
T |
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| Q |
288 |
ccccctcttgttcatcttcatcactttcttcagaactataacttaccttcctttttctaccacgtttc |
355 |
Q |
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|||| |||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
51496094 |
ccccatcttgttcatcttcgtcattttcttcagaactataacttaccttcttttttctaccaggtttc |
51496027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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