View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4445-Insertion-17 (Length: 260)
Name: NF4445-Insertion-17
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445-Insertion-17 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 154; Significance: 9e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 89 - 260
Target Start/End: Complemental strand, 8152474 - 8152306
Alignment:
| Q |
89 |
ccagccaaagacacaaacaaaataggaaatgcaactataatttaatgacaacatctattttaaactgaaattctgctgctaccaaagttctagaaggatt |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8152474 |
ccagccaaagacacaaacaaaataggaaatgcaactataatttaat---aacatctattttaaactgaaattctgctgctaccaaagttctagaaggatt |
8152378 |
T |
|
| Q |
189 |
ggtctaatgattattctatgtaagacatgatatgcggtgttaatcgcatcggtctacaagtgtttaggaagg |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8152377 |
ggtctaatgattattctatgtaagacatgatatgcggtgttaatcgcatcggtctaaaagtgtttaggaagg |
8152306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 8152558 - 8152501
Alignment:
| Q |
28 |
ataaaaaatgatataaattttcacagcgtatagagaataattaatagtatgaatcaac |
85 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8152558 |
ataaaaaatgatataaattttcacaacgtatagagaataattaatagtatgaatcaac |
8152501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 39615158 - 39615202
Alignment:
| Q |
26 |
aaataaaaaatgatataaattttcacagcgtatagagaataatta |
70 |
Q |
| |
|
||||||||| ||||||||||| |||| ||||||||||||||||| |
|
|
| T |
39615158 |
aaataaaaatagatataaatttacacaacgtatagagaataatta |
39615202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University