View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445-Insertion-19 (Length: 136)
Name: NF4445-Insertion-19
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445-Insertion-19 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 1e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 15 - 136
Target Start/End: Complemental strand, 14010528 - 14010407
Alignment:
| Q |
15 |
ctcttcaggggatcgtgttaaatttgttatacatattttgtatttaaacaattattttttaatcaaattatactcgttggacctttgtatccctgatgtt |
114 |
Q |
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| T |
14010528 |
ctcttcaggggatcgtgttaaatttgttatacatattttgtatttaaacaattattttttaatcaaattatactcgttggacctttgtatccctgatgtt |
14010429 |
T |
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| Q |
115 |
aaatttcaagctccgtacctgc |
136 |
Q |
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| T |
14010428 |
aaatttcaagctccgtgcctgc |
14010407 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 40338209 - 40338244
Alignment:
| Q |
50 |
ttttgtatttaaacaattattttttaatcaaattat |
85 |
Q |
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| T |
40338209 |
ttttgtttttaaacaattattttttaatcaaattat |
40338244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 24303683 - 24303648
Alignment:
| Q |
50 |
ttttgtatttaaacaattattttttaatcaaattat |
85 |
Q |
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| T |
24303683 |
ttttgtttttaaacaattattttttaatcaaattat |
24303648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 20462750 - 20462700
Alignment:
| Q |
36 |
atttgttatacatattttgtatttaaacaattatt-ttttaatcaaattat |
85 |
Q |
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| T |
20462750 |
atttcttatatatattttatatttaaacaattattcttttaatcaaattat |
20462700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 86
Target Start/End: Complemental strand, 40556330 - 40556303
Alignment:
| Q |
59 |
taaacaattattttttaatcaaattata |
86 |
Q |
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| T |
40556330 |
taaacaattattttttaatcaaattata |
40556303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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