View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4445-Insertion-2 (Length: 829)
Name: NF4445-Insertion-2
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445-Insertion-2 |
 | |
|
| [»] chr5 (10 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 678; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 678; E-Value: 0
Query Start/End: Original strand, 8 - 829
Target Start/End: Original strand, 10294294 - 10295107
Alignment:
| Q |
8 |
acattttcattgttaatttatgatcaggatatttggcagccaggtgttgtttctttatggtttaggttatacaaatccaacttatgcctctgccttacag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10294294 |
acattttcattgttaatttatgatcaggatatttggcagccaggtgttgtttctttatggtttaggttatacaaatccaacttatgcctctgccttacag |
10294393 |
T |
|
| Q |
108 |
ccttctattcctgtctttacctttctacttgctgtcatcatggggtcagctccactcttatcaatttctactttcagtcttttatgtatttcttatgaat |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10294394 |
ccttctattcctgtctttacctttctacttgctgtcatcatggggtcagcttcactcttatcaatttctactttcagtcttttatgtatttcttatgaat |
10294493 |
T |
|
| Q |
208 |
gtatcaaaaacaattggactattagtccnnnnnnnnnnngcagagcacataggcacaaatgcacattcataattgtagtgcagaaatctctacatgaata |
307 |
Q |
| |
|
|||||||||||||||| | |||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10294494 |
gtatcaaaaacaattg-attattagtc---aatttttttgtagaacacataggcacaaatgcacattcataattgtagtgcagaaatctctacatgaata |
10294589 |
T |
|
| Q |
308 |
aaattatcccaatacacttatgcattaaggaatgacacagtttaataatcttatgttatgtctgcagtgtagaaagagtgaatctacagagttttgaagg |
407 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10294590 |
aaatcatcccaatacacttatgcattaagcaatgacacagtttaataatcttatgttatgtctgcagtgtagaaagagtgaatctgcagagttttgaagg |
10294689 |
T |
|
| Q |
408 |
tctgacaaaggttggagggactgttatatgtgtttctggtgccatatttatggctttgtaccgcggtccatcattgataggatataccgaaccagtgatc |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
10294690 |
tctgacaaaggttggagggactgttatatgtgtttctggtgccatatttatggctttgtaccgcggtccatcgttgataggatataacgaaccagtgatc |
10294789 |
T |
|
| Q |
508 |
ataccacataatgaaataattgtcagtggtcagccagagccttttggttttggatggttgattactggtttactgaatcttggatcagaaaattttgaat |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10294790 |
ataccacataatgaaataattgtcagtggtcagccagagccttttggttttggatggttgattactggtttactgaatcttggatcagaaaatttcgaac |
10294889 |
T |
|
| Q |
608 |
ttggagttatgttcttgataggtaactgcacgtgcttggctgctttcctagccattcaggtattgatctttttttttatatacattaaatgannnnnnnn |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10294890 |
ttggagttatgttcttgataggtaactgcacgtgcttggctgctttcctagccattcaggtattgatctttttttttatatacattaaatga-----ttt |
10294984 |
T |
|
| Q |
708 |
nnnnnaattcattaagtgactgttgatatcaatggaaagtttaac-tttttccaataactaattattttcaggcgccggtactaaaaaagtatcctgcat |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10294985 |
tttttaattcattaagtgactgttgatatcaatggaaagtttaacttttttccaataactaattattttcaggcgccggtactaaaaaagtatcctgcat |
10295084 |
T |
|
| Q |
807 |
atttatctgtgacagcattttca |
829 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
10295085 |
atttatctgtgacagcattttca |
10295107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 8 - 695
Target Start/End: Original strand, 10302050 - 10302733
Alignment:
| Q |
8 |
acattttcattgttaatttatgatcaggatatttggcagccaggtgttgtttctttatggtttaggttatacaaatccaacttatgcctctgccttacag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10302050 |
acattttcattgttaatttatgatcaggatatttggcagccaggtgttgtttctttatggtttaggttatacaaatccaacttatgcctctgccttacag |
10302149 |
T |
|
| Q |
108 |
ccttctattcctgtctttacctttctacttgctgtcatcatggggtcagctccactcttatcaatttctactttcagtcttttatgtatttcttatgaat |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10302150 |
ccttctattcctgtctttacctttctacttgctgtcatcatggggtcagcttcactcttatcaatttctactttcagtcttttatgtatttcttatgaat |
10302249 |
T |
|
| Q |
208 |
gtatcaaaaacaattggactattagtccnnnnnnnnnnngcagagcacataggcacaaatgcacattcataattgtagtgcagaaatctctacatgaata |
307 |
Q |
| |
|
|||||||||||||||| | |||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10302250 |
gtatcaaaaacaattg-attattagtc---aatttttttgtagaacacataggcacaaatgcacattcataattgtagtgcagaaatctctacatgaata |
10302345 |
T |
|
| Q |
308 |
aaattatcccaatacacttatgcattaaggaatgacacagtttaataatcttatgttatgtctgcagtgtagaaagagtgaatctacagagttttgaagg |
407 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10302346 |
aaattatcccaatacacttatgcattaagcaatgacacattttaataatcttatgttatgtctgcagtgtagaaagagtgaatctgcagagttttgaagg |
10302445 |
T |
|
| Q |
408 |
tctgacaaaggttggagggactgttatatgtgtttctggtgccatatttatggctttgtaccgcggtccatcattgataggatataccgaaccagtgatc |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
10302446 |
tctgacaaaggttggagggactgttatatgtgtttctggtgccatatttatggctttgtaccgcggtccatcgttgataggatataacgaaccagtgatc |
10302545 |
T |
|
| Q |
508 |
ataccacataatgaaataattgtcagtggtcagccagagccttttggttttggatggttgattactggtttactgaatcttggatcagaaaattttgaat |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
10302546 |
ataccacataatgaaataattgtcagtggtcagccagagccttttggttttggatggttgattactggtttactgaatcttggattagaaaatttcaaac |
10302645 |
T |
|
| Q |
608 |
ttggagttatgttcttgataggtaactgcacgtgcttggctgctttcctagccattcaggtattgatctttttttttatatacattaa |
695 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||| ||||||||| ||| || |||||| |
|
|
| T |
10302646 |
ttggagttatgttcttgataggtaactgcacattcatggctgctttcctagccattcaggtatctatcttttttgttaaatccattaa |
10302733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 363 - 829
Target Start/End: Original strand, 10286724 - 10287176
Alignment:
| Q |
363 |
ttatgtctgcagtgtagaaagagtgaatctacagagttttgaaggtctgacaaaggttggagggactgttatatgtgtttctggtgccatatttatggct |
462 |
Q |
| |
|
|||||| ||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| | |
|
|
| T |
10286724 |
ttatgtatgcagtgtagaaagagtgaatttgcagagtattgaaggtctgacaaaggttggagggactcttatatgtgtttcaggtgccatatttatggtt |
10286823 |
T |
|
| Q |
463 |
ttgtaccgcggtccatcattgataggatataccgaaccagtgatcataccacataatgaaataattgtcagtggtcagccagagccttttggttttggat |
562 |
Q |
| |
|
||||| || |||||||| |||||||||||||||||||||| || |||||||| ||||||||||| |||||||||||||||||||| || || || |
|
|
| T |
10286824 |
ttgtatcgtggtccatcggtgataggatataccgaaccagtcattataccacagaatgaaataatcgtcagtggtcagccagagcc------ttctgcat |
10286917 |
T |
|
| Q |
563 |
ggttgattactggtttactgaatcttggatcagaaaattttgaatttggagttatgttcttgataggtaactgcacgtgcttggctgctttcctagccat |
662 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || ||||||||| |||||||| ||||||||||||| |||||||||||| ||||||||||| |||| || |
|
|
| T |
10286918 |
ggttgattactggtttacagaatcttggattggataattttgaacttggagttgtgttcttgataggcaactgcacgtgcatggctgctttcttagcgat |
10287017 |
T |
|
| Q |
663 |
tcaggtattgatctttttttttatatacattaaatgannnnnnnnnnnnnaattcattaagtgactgttgatatcaatggaaagtttaact--ttttcca |
760 |
Q |
| |
|
|||||||| ||||||||| |||||| |||||||||| |||||||||||| ||||||| ||||| | | |||||||| | ||||| |
|
|
| T |
10287018 |
tcaggtatctatcttttttgttatatccattaaatga-----ttttttttaattcattaagtaactgttgctatcattagcaagtttaattaattttc-- |
10287110 |
T |
|
| Q |
761 |
ataactaattattttcaggcgccggtactaaaaaagtatcctgcatatttatctgtgacagcattttca |
829 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||| |||| |
|
|
| T |
10287111 |
---attaattattttcaggcaccggtactaaaaaagtatcctgcaaatctatctgtgacagcatattca |
10287176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 10286386 - 10286565
Alignment:
| Q |
23 |
atttatgatcaggatatttggcagccaggtgttgtttctttatggtttaggttatacaaatccaacttatgcctctgccttacagccttctattcctgtc |
122 |
Q |
| |
|
|||||| |||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| || |||| ||| |
|
|
| T |
10286386 |
atttatcatcaggatatttggcaaccagctgttgtttcttattggtttaggttatacaaatccaacttatgcagctgccttacagcctgctgttccagtc |
10286485 |
T |
|
| Q |
123 |
tttacctttctacttgctgtcatcatggggtcagctccactcttatcaatttctactttcagtcttttatgtatttctta |
202 |
Q |
| |
|
||||||||||| |||||||| |||||| |||||||| |||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
10286486 |
tttacctttctgcttgctgtgatcatgcggtcagcttcactcttatcaacttctactttgagtcttttatgtatttctta |
10286565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 363 - 670
Target Start/End: Complemental strand, 10280488 - 10280187
Alignment:
| Q |
363 |
ttatgtctgcagtgtagaaagagtgaatctacagagttttgaaggtctgacaaaggttggagggactgttatatgtgtttctggtgccatatttatggct |
462 |
Q |
| |
|
|||||| |||||||||||||||||||| | |||||| |||||||||| ||||||||||||| ||| |||||||||| || ||||| |||| |||| | |
|
|
| T |
10280488 |
ttatgtatgcagtgtagaaagagtgaacttgaagagttctgaaggtctggcaaaggttggaggaactcttatatgtgtctcgggtgctgtattgatggtt |
10280389 |
T |
|
| Q |
463 |
ttgtaccgcggtccatcattgataggatataccgaaccagtgatcataccacataatgaaataattgtcagtggtcagccagagccttttggttttggat |
562 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| |||| || | |||||||| ||||| |||| |||| |||||||||||||||| || ||||| |
|
|
| T |
10280388 |
ttgtatcgcggtccatcgttgataggatatactgaactggtcgttataccacagaatgacataagtgtcggtggtcagccagagcc------ttctggat |
10280295 |
T |
|
| Q |
563 |
ggttgattactggtttactgaatcttggatcagaaaattttgaatttggagttatgttcttgataggtaactgcacgtgcttggctgctttcctagccat |
662 |
Q |
| |
|
||||||| | |||||||| ||||||||||| ||| ||||||||| |||||||| ||||||||||||| ||| | |||| |||||||||||||| |||| |
|
|
| T |
10280294 |
ggttgatcagtggtttacagaatcttggattagataattttgaacttggagttgtgttcttgatagggaacactatgtgcatggctgctttcctaaccat |
10280195 |
T |
|
| Q |
663 |
tcaggtat |
670 |
Q |
| |
|
|| ||||| |
|
|
| T |
10280194 |
tctggtat |
10280187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 717 - 829
Target Start/End: Original strand, 10302728 - 10302841
Alignment:
| Q |
717 |
cattaagtgactgttgatatcaatggaaagtttaactt-tttccaataactaattattttcaggcgccggtactaaaaaagtatcctgcatatttatctg |
815 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||| | |
|
|
| T |
10302728 |
cattaagtgactgttgatatcaatggcaagtttaacttatttccaataactaattgttttcaggcgcaggtactaaaaaagtatcctgcatatctatcag |
10302827 |
T |
|
| Q |
816 |
tgacagcattttca |
829 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10302828 |
tgacagcattttca |
10302841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 10281050 - 10280915
Alignment:
| Q |
18 |
tgttaatttatgatcaggatatttggcagccaggtgttgtttctttatggtttaggttatacaaatccaacttatgcctctgccttacagccttctattc |
117 |
Q |
| |
|
|||| ||||||||||||||||||||| | |||| | |||||||| ||||||| ||||||| ||||||||||||||| |||| ||||||||| |||||| |
|
|
| T |
10281050 |
tgttgatttatgatcaggatatttggaaaccagctcctgtttcttattggtttaagttatactaatccaacttatgccgctgcgttacagcctgctattc |
10280951 |
T |
|
| Q |
118 |
ctgtctttacctttctacttgctgtcatcatggggt |
153 |
Q |
| |
|
||||||||||||| || ||||||| ||||| |||| |
|
|
| T |
10280950 |
ctgtctttaccttcctctttgctgtaatcatcgggt |
10280915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 253 - 295
Target Start/End: Original strand, 10286626 - 10286668
Alignment:
| Q |
253 |
cacataggcacaaatgcacattcataattgtagtgcagaaatc |
295 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10286626 |
cacataggcacaaatgcacattcataaatgtagtgcagaaatc |
10286668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 768 - 829
Target Start/End: Complemental strand, 10279601 - 10279540
Alignment:
| Q |
768 |
attattttcaggcgccggtactaaaaaagtatcctgcatatttatctgtgacagcattttca |
829 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||| || ||||||| ||||||| |||| |
|
|
| T |
10279601 |
attattttcaggcgcctgtattaaaaaagtatcctgcaaatctatctgtaacagcatattca |
10279540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 156
Target Start/End: Complemental strand, 10266058 - 10265929
Alignment:
| Q |
27 |
atgatcaggatatttggcagccaggtgttgtttctttatggtttaggttatacaaatccaacttatgcctctgccttacagccttctattcctgtcttta |
126 |
Q |
| |
|
|||| |||||||||||||| |||| | ||||||| ||||||| | |||||||||||||||||||| ||||| ||||||| | ||||| ||||||| |
|
|
| T |
10266058 |
atgaccaggatatttggcaaccagcttctgtttctcattggtttaagctatacaaatccaacttatgctgctgccacacagcctgccattccagtcttta |
10265959 |
T |
|
| Q |
127 |
cctttctacttgctgtcatcatggggtcag |
156 |
Q |
| |
|
| ||| | | ||||| || |||||||||| |
|
|
| T |
10265958 |
catttttgttcgctgtaattatggggtcag |
10265929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 558 - 669
Target Start/End: Original strand, 30581390 - 30581501
Alignment:
| Q |
558 |
tggatggttgattactggtttactgaatcttggatcagaaaattttgaatttggagttatgttcttgataggtaactgcacgtgcttggctgctttccta |
657 |
Q |
| |
|
||||||||| ||| ||||||| |||||||||||| ||| ||||| | |||| ||| ||| ||| ||||| ||||||| |||| ||||| |||| ||| |
|
|
| T |
30581390 |
tggatggttagttagtggtttaatgaatcttggattagaccattttcatgttggggttctgtgcttaataggaaactgcatgtgcatggctacttttcta |
30581489 |
T |
|
| Q |
658 |
gccattcaggta |
669 |
Q |
| |
|
||||||||||| |
|
|
| T |
30581490 |
tccattcaggta |
30581501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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