View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445-Insertion-28 (Length: 676)
Name: NF4445-Insertion-28
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445-Insertion-28 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 8 - 676
Target Start/End: Original strand, 30399244 - 30399914
Alignment:
| Q |
8 |
gtacctacccttgcaaccctacttgtcagaaccgtgtttgggagtcagcaactgcatcatacccagcaatgtacgccagagtctactaatttaatatatt |
107 |
Q |
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| T |
30399244 |
gtacttacccttgcaaccctacttgtcagaaccgtgtttgggagtcagcaactgcatcatacccagcaatgtacactagagtctactaatttaatatatt |
30399343 |
T |
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| Q |
108 |
tttcatt---atggcatnnnnnnntagcattattattgaatgtaaaaataaagcaagcataataagagagaaagcgccattgcattgagcttgtgtgcta |
204 |
Q |
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| T |
30399344 |
tttcattcctatggcataaaaaaatagcattattattgaatgtaaaaataaagcaagcataataagagagaaagcgccattgcattgagcttgtgtgcta |
30399443 |
T |
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| Q |
205 |
ggcgcaatcaattattgtccaatttatatttactatactctctataaaattgtaagttccatggtttcactaattgattgttctacnnnnnnnaatgttg |
304 |
Q |
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| T |
30399444 |
ggcgcaatcaattattgtccaatttatatttactatactctctataaaattgtaagttccatggtttcactaattgattgt-ctactttttttaatgttg |
30399542 |
T |
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| Q |
305 |
gtaccaatatcctattgacaaattaattcaaaagcatttttgtattatgacggcagggacggaaagcaaaacatttataactatttacatatttaagcca |
404 |
Q |
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| T |
30399543 |
gtaccaatatcctatggacaaattaattcaaaagcatttttgtatgatgacggcaaggacagaaagcaaaacatttataacgatttacatatttaagcca |
30399642 |
T |
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| Q |
405 |
taatcttatcttataatgagtttatctttaatacgaagatatcaaatactattttatattttatttttgtctagattaacttgcactaaaactgtgaata |
504 |
Q |
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| T |
30399643 |
taatcttatattataatgagtttatctttaatacgaagatatcaaatactattttatattttatttttgtctaaattaacttgcactaaaactgtgaata |
30399742 |
T |
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| Q |
505 |
cccaaaataaatctgcacttcaaatttatttaatgtaaatttcagaaacacgttacgttacaccaaagaaaaatgccaaaactagtttaaatctcagtcg |
604 |
Q |
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| T |
30399743 |
cccaaaataaatctacacttcaaatttatttaatgtaaatttcagaaacacgttacattacaccaaagaaaaatgccaaaactagtttaaatctcagtcg |
30399842 |
T |
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| Q |
605 |
tggcatgccactgttcctctgctttctcacacannnnnnnctctgacaactactgaagttgctctgtctctg |
676 |
Q |
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| T |
30399843 |
tggcatgccactgttcctctgctttctcacacatttttttctctgacaactactgaagttgctctgtctctg |
30399914 |
T |
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