View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445-Insertion-29 (Length: 654)
Name: NF4445-Insertion-29
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445-Insertion-29 |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 3e-62; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 8464856 - 8465080
Alignment:
| Q |
11 |
cgaacgataataattttaaaaaactagtaagacacgtgagagggatggagaaaaataatttcattagtaatgaaacacaagaaacttttggaaattgtag |
110 |
Q |
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| T |
8464856 |
cgaacgataataattttaaaaaactagtaagacacgtgagagggatggagaaaaataatttcattattaatgaaacacaagaaacttttggaaattgtag |
8464955 |
T |
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| Q |
111 |
gaaattgctcgtggaaatctgt-------------cattcacacgtttattccacacctcattttatttcatattttcccgatatcatatctattagatg |
197 |
Q |
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| T |
8464956 |
gaaattgctcgtggaaatctgtcgaataatatttgcattcacacgttcattccacacctcattaa---------------ggtatcatatctattagatc |
8465040 |
T |
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| Q |
198 |
atcctttttcttcctttctctcgatgtgtagaatagatat |
237 |
Q |
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| T |
8465041 |
atcctttttcttcctttctctcgatgtgtagaatagatat |
8465080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 231 - 351
Target Start/End: Original strand, 8466623 - 8466743
Alignment:
| Q |
231 |
tagatatgagcgtttaataaacattgcctacgtagaaaacttaaaagttgctgagtattgaaatgtcaccgttcatctcaaagaatgaactttccctgag |
330 |
Q |
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| T |
8466623 |
tagatatgaatgtttaataaacattacctacgtagaaaacttaaaagttgttgagtattgaaatgtcaccggtcatctcaaagaatgaacttttcctgag |
8466722 |
T |
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| Q |
331 |
ttaagatgctcagataaatta |
351 |
Q |
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| T |
8466723 |
ttaagatgctcagataaatta |
8466743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 476 - 555
Target Start/End: Original strand, 8467320 - 8467399
Alignment:
| Q |
476 |
tagctgcgagtactacaaagagacttcaggccaaaaaacagctatcatattcacacatactatattacatagtttcagtt |
555 |
Q |
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| T |
8467320 |
tagctgcgagtactacaaagagacttcaggccaaaaaacagttatcatattcacacatactatattacatagtttcagtt |
8467399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 382 - 460
Target Start/End: Original strand, 8467198 - 8467276
Alignment:
| Q |
382 |
attagtccgcacattctcaatgatacaggaaattcatcccacaatttaaatcagaacaaaaatagcaaaaggatgtctc |
460 |
Q |
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| T |
8467198 |
attagtccgcacattctcaatgatacagaaaattcatcccacaatttaaatcagaacaaaaatagcaaaaggatgtctc |
8467276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 585 - 654
Target Start/End: Original strand, 8467399 - 8467468
Alignment:
| Q |
585 |
tgcagcattagcttttctacccctcttattagtagtagacttaatggacttgctcttcttattcacaacc |
654 |
Q |
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| T |
8467399 |
tgcagcattagcttttctacccctcttattagtagtagacttaatggacttgctcttcttattcacaacc |
8467468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 347 - 385
Target Start/End: Original strand, 8467152 - 8467190
Alignment:
| Q |
347 |
aattattaatacatgcactttgattgtcacagtgaatta |
385 |
Q |
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| T |
8467152 |
aattattaatacttgcactttgattgtcatagtgaatta |
8467190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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