View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445-Insertion-3 (Length: 756)
Name: NF4445-Insertion-3
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 353 - 752
Target Start/End: Complemental strand, 4946019 - 4945620
Alignment:
| Q |
353 |
ctgacatttttgctccattttgttccaattatgctcatgtatgttagggacctagatatttgaggcgaggattaattgaagagtacagtgacattaatag |
452 |
Q |
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| T |
4946019 |
ctgacatttttgctccattttgttccaattatgctcatgtatgttagggacctagatatttgaggcgaggattaattgaagagtacagtgacattaatag |
4945920 |
T |
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| Q |
453 |
tacatctcaaggagatatatttaaatctccctgtttaaagacagccagtgcttttgttgtcaagcgatcaagaaattcaacattgccagatagcagtcct |
552 |
Q |
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| T |
4945919 |
tacatctcaaggagatatatttaaatctccctgtttaaagacagccagtgcttttgttgtcaagcgatcaagaaattcaacattgccagatagcagtcct |
4945820 |
T |
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| Q |
553 |
tctcttcccgaagctttcagcaatgtggctgacgaagatatgtggttgaaaatgaacaatggctacgttgcggaccttgattctcttcaaattactccca |
652 |
Q |
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| T |
4945819 |
tctcttcccgaagctttcagcaatgtggctgacgaagatatgtggttgaaaatgaacaatggctacgttgcggaccttgattctcttcaaattactccca |
4945720 |
T |
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| Q |
653 |
ctcgaaatattcaatcattcccactaagtgatacaactcctgtaagttcatatctttatttctatttttcaaaaggaaatttctttttatgtctttgttt |
752 |
Q |
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| T |
4945719 |
ctcgaaatattcaatcattcccactaagtgatacaactcctgtaagttcatatctttatttctattttttaaaaggaaatttctttttatgtctttgttt |
4945620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 6 - 286
Target Start/End: Complemental strand, 4946369 - 4946086
Alignment:
| Q |
6 |
cactatttagtatgaaatggagcgtggtaagcttgaaatggaactggaagaggagaggaaatcgcgtaatcaatggattagcgagcaacagatgaaaatt |
105 |
Q |
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| T |
4946369 |
cactatttagtatgaaatggagcgtggtaagcttgaaatggaactggaagaggagaggaaatcgcgtaatcaatggattagcgagcaacagatgaaaatt |
4946270 |
T |
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| Q |
106 |
gaaaattccagtactacatcattctcagtctcagattgtgggactaacgacaatcaggtacatctcataagaaatgaa---ataaagcctgtaaatgtta |
202 |
Q |
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| T |
4946269 |
gaaaattccagtactacatcattctcagtctcagattgtgggactaacgacaatcaggtacatctcataagaaatgaaataataaagcctgtaaatgtta |
4946170 |
T |
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| Q |
203 |
aatagtttctaattctaatacaatggcaatctgctcaactttgttatttatcatggtcatatttgttcctccggacaattcata |
286 |
Q |
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| T |
4946169 |
aatagtttctaattctaatacaatggcaatctgctcaactttgttatttatcatggtcatatttgttcctccggacaattcata |
4946086 |
T |
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