View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445-Insertion-30 (Length: 244)
Name: NF4445-Insertion-30
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445-Insertion-30 |
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| [»] chr6 (8 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 244
Target Start/End: Original strand, 2916976 - 2917212
Alignment:
| Q |
8 |
aaattcaccgtcccagaaaacaacaccggtaacatcttgactggtaccgatcttgagattgagtttactaagaaggctgattgtgctgaatcatcaaaat |
107 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2916976 |
aaattcaccgtcccagaaaacaacaccggtaatatcttgactggtaccgatcttgagattgagtttactaagaagcctgattgtgctgaatcatcaaaat |
2917075 |
T |
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| Q |
108 |
ggttgatgtttgttgataataatactcaactaagttgtgttgggattggtggtggaacaaactatcatgggatagaaacaataagtgggaaattcttaat |
207 |
Q |
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| T |
2917076 |
ggttgatgtttcttgatcataatactcaactaagttgtgttggtattggtggtgcaacaaactatcatggtatagaaacaataagtggcaaattcttaat |
2917175 |
T |
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| Q |
208 |
agtgaaacatggatctggtcatgtttatagggttgga |
244 |
Q |
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| T |
2917176 |
agtgaaacatggatctggtcatgtttataggcttgga |
2917212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 8 - 244
Target Start/End: Original strand, 2930564 - 2930800
Alignment:
| Q |
8 |
aaattcaccgtcccagaaaacaacaccggtaacatcttgactggtaccgatcttgagattgagtttactaagaaggctgattgtgctgaatcatcaaaat |
107 |
Q |
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| T |
2930564 |
aaattcaccatcccagaaaacagcactggtaatatcttgaccggtaccgatcttgagatcgagttcactaaaaaggctgattgtgctgaagcatcaaaat |
2930663 |
T |
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| Q |
108 |
ggttgatgtttgttgataataatactcaactaagttgtgttgggattggtggtggaacaaactatcatgggatagaaacaataagtgggaaattcttaat |
207 |
Q |
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| T |
2930664 |
ggttgatgtttgttgatcataatactcaactaagttgtgttggtattggtggtgcaacaaactatcatggtatagaaacaataagtggcaaattcttaat |
2930763 |
T |
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| Q |
208 |
agtgaaacatggatctggtcatgtttatagggttgga |
244 |
Q |
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| T |
2930764 |
agtgaaacatggatctggtcatgtttataggcttgga |
2930800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 8 - 244
Target Start/End: Original strand, 24554955 - 24555191
Alignment:
| Q |
8 |
aaattcaccgtcccagaaaacaacaccggtaacatcttgactggtaccgatcttgagattgagtttactaagaaggctgattgtgctgaatcatcaaaat |
107 |
Q |
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| T |
24554955 |
aaattcaccatactagaaaacagcactagtaacatcgttaccggtaccgatcttgagatcgagttcattaacaagccagattgtgctgaatcttccaaat |
24555054 |
T |
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| Q |
108 |
ggttgatgtttgttgataataatactcaactaagttgtgttgggattggtggtggaacaaactatcatgggatagaaacaataagtgggaaattcttaat |
207 |
Q |
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|||||||| |||||||| || ||||||||||||| |||||| ||||||||| ||||||||| ||| ||||| ||| ||||| ||||| ||||| |
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| T |
24555055 |
ggttgatggttgttgatcatgtcactcaactaagttttgttggtattggtggtcctgcaaactatcctggtgtagaattaattagtggaaaatttttaat |
24555154 |
T |
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| Q |
208 |
agtgaaacatggatctggtcatgtttatagggttgga |
244 |
Q |
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| T |
24555155 |
tttgaaacatggatctggtaatgcttatagggttgga |
24555191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 36 - 244
Target Start/End: Original strand, 24566686 - 24566900
Alignment:
| Q |
36 |
gtaacatcttgactggtaccgatcttgagattgagtttactaagaaggctgattgtgctgaatcatcaaaatggttgatgtttgttgataataatactca |
135 |
Q |
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|||| |||||| | ||||| ||||||||||||||||| |||| |||| ||||||| ||| |||| || ||||||| ||||||||||||| || | ||||| |
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| T |
24566686 |
gtaatatcttgccaggtactgatcttgagattgagttcactacgaagcctgattgcgctaaatcgtcgaaatggtcgatgtttgttgatcatgacactca |
24566785 |
T |
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| Q |
136 |
actaagttgtgttgggattggtggtggaacaaactatcatgggatagaaacaataagtgggaaattcttaatagtga------aacatggatctggtcat |
229 |
Q |
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| T |
24566786 |
actaagttttgtcggtattggtggttctgcgaacaatcctggtgtagaaacaaccagtggaaaatttttagtagtgaaacatcaacatggatctggtcat |
24566885 |
T |
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| Q |
230 |
gtttatagggttgga |
244 |
Q |
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| T |
24566886 |
gcttataggattgga |
24566900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 20505583 - 20505648
Alignment:
| Q |
62 |
gagattgagtttactaagaaggctgattgtgctgaatcatcaaaatggttgatgtttgttgataat |
127 |
Q |
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| T |
20505583 |
gagattgagttcacaaagaagcctgattgtgttgaatcatcaaaatggttgatatttattgataat |
20505648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 118
Target Start/End: Complemental strand, 6869581 - 6869508
Alignment:
| Q |
45 |
tgactggtaccgatcttgagattgagtttactaagaaggctgattgtgctgaatcatcaaaatggttgatgttt |
118 |
Q |
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| T |
6869581 |
tgacaggtaccgaacttaagattgagttcactaagaagcctaattgtgtcaaatcatcacaatggttgatgttt |
6869508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 127
Target Start/End: Original strand, 20517633 - 20517672
Alignment:
| Q |
88 |
ttgtgctgaatcatcaaaatggttgatgtttgttgataat |
127 |
Q |
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| T |
20517633 |
ttgtgttgaatcatcaaaatggttgatatttgttgataat |
20517672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 20475785 - 20475842
Alignment:
| Q |
68 |
gagtttactaagaaggctgattgtgctgaatcatcaaaatggttgatgtttgttgata |
125 |
Q |
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| T |
20475785 |
gagttcacaaagaagcctaattgcgttgaatcatcaaaatggttgatatttgttgata |
20475842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 160
Target Start/End: Complemental strand, 13072350 - 13072269
Alignment:
| Q |
79 |
gaaggctgattgtgctgaatcatcaaaatggttgatgtttgttgataataatactcaactaagttgtgttgggattggtggt |
160 |
Q |
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| T |
13072350 |
gaagcctgattgtgttgaatcttcaaaatggttgatatttgttgataatgttattcaaaaatcttgtgttggtattggtggt |
13072269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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