View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4445-Insertion-5 (Length: 707)

Name: NF4445-Insertion-5
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4445-Insertion-5
NF4445-Insertion-5
[»] chr2 (4 HSPs)
chr2 (5-707)||(31645670-31646392)
chr2 (619-661)||(3044185-3044227)
chr2 (619-663)||(10166461-10166505)
chr2 (624-668)||(23480920-23480964)
[»] chr1 (6 HSPs)
chr1 (552-700)||(36016666-36016819)
chr1 (619-661)||(20505490-20505532)
chr1 (619-661)||(26676744-26676786)
chr1 (618-661)||(28756690-28756733)
chr1 (593-658)||(2884052-2884117)
chr1 (618-663)||(42966902-42966947)
[»] chr8 (4 HSPs)
chr8 (554-700)||(30998497-30998649)
chr8 (619-661)||(9932309-9932351)
chr8 (619-661)||(25582794-25582836)
chr8 (604-658)||(27529558-27529612)
[»] chr5 (3 HSPs)
chr5 (619-661)||(26369148-26369190)
chr5 (604-668)||(15259086-15259150)
chr5 (624-668)||(35101388-35101432)
[»] chr4 (3 HSPs)
chr4 (619-661)||(40850659-40850701)
chr4 (619-661)||(47590668-47590710)
chr4 (619-661)||(56024890-56024932)
[»] chr3 (3 HSPs)
chr3 (619-661)||(10436644-10436686)
chr3 (618-661)||(15029926-15029969)
chr3 (624-697)||(22649500-22649573)
[»] chr7 (2 HSPs)
chr7 (619-661)||(8123973-8124015)
chr7 (619-661)||(40858233-40858275)
[»] chr6 (3 HSPs)
chr6 (619-661)||(6029175-6029217)
chr6 (619-664)||(18972823-18972868)
chr6 (624-661)||(30987220-30987257)


Alignment Details
Target: chr2 (Bit Score: 482; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 5 - 707
Target Start/End: Complemental strand, 31646392 - 31645670
Alignment:
Q  5 acaattttgaagacaaaaatgccctttgattcatgttgggagatatgtttattcaagctagttaagggtaatttg--------------attcatgtctg 90  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||              || ||||||||    
T  31646392 acaattttgaagacaaaaatgccctttgattcatgttgggaaatatgtttattcaagctagttaagggtaatttgggatatatgtatatatgcatgtctg 31646293  T
Q  91 gacaaaagccagattggtgatttgattcttaatttctcgttatttcactatctggttattcaagatattattttttgaccaattggttattcaagattgt 190  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31646292 gacaaaagccagattggtgatttaattcttaatttctcgttatttccctatctagttattcaagatattattttttgaccaattggttattcaagattgt 31646193  T
Q  191 atagctagtaataccattcttatcgctatcatatgttgttgtttttggcatatataa-----tttataaccatatataccatactaacaacatatttaga 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||    
T  31646192 atagctagtaataccattcttatcgctatcatatgttgttgtttttggcatatataatttaatttataaccatatataccatactaacaacatatttaga 31646093  T
Q  286 ctacaaaggtaacgcagactttgtaggagccaggtagtttcacttcac--taggtcatcttattcgacacctttattaaaaggacaccttaacccgatga 383  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  31646092 ctacaaaggtaacgcggactttgtagaagccaggtagtttcacttcactataggtcatcttattcaacacctttattaaaaggacaccttaacccaatga 31645993  T
Q  384 aacaaattgtggatatannnnnnnnaagaagttaaaat--aaaatatattgactcaaaaacttaggaattctagaacagtataaggagtgttgaaaaccc 481  Q
    |||||||||||  ||||        |||||||||||||  ||||||||||||||||||||||||||||||      ||| |||| ||||| |||||||||    
T  31645992 aacaaattgtgtttata--ttttttaagaagttaaaataaaaaatatattgactcaaaaacttaggaatt------cagcataaagagtgctgaaaaccc 31645901  T
Q  482 tacaaagcaagtaataaataacatcaaatactaaaggaaatgcgaaatcaaaaaagtttaaagcccctcgattacaaaatgatttacaaacaaactaaag 581  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  31645900 tacaaagcaagtaataaataacatcaaataccaaaggaaatgcgaaatcaaaaaagtttaaagcgcctcgattacaaaatgattcacaaacaaactaaag 31645801  T
Q  582 gattaaacca-----tgtgataagtagaagccaaattaatctgattagctttcagccaccaataagattgaagcttaattttatcaaaaagagtttgtaa 676  Q
    ||||||||||     ||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  31645800 gattaaaccaccacgtgtgataagtagaagccaaattaatctgattcgctttcggccaccaataaaattgaagcttaattttatcaaaaagagtttgtaa 31645701  T
Q  677 agagtcctcttgttgatgaaacacacgataa 707  Q
    ||||||||||||||||  |||||||||||||    
T  31645700 agagtcctcttgttgacaaaacacacgataa 31645670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 619 - 661
Target Start/End: Complemental strand, 3044227 - 3044185
Alignment:
Q  619 gattagctttcagccaccaataagattgaagcttaattttatc 661  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  3044227 gattagctttcagccaccagtaagattgaagcttaactttatc 3044185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 663
Target Start/End: Complemental strand, 10166505 - 10166461
Alignment:
Q  619 gattagctttcagccaccaataagattgaagcttaattttatcaa 663  Q
    |||| ||||| ||||||||||||||||| | ||||||||||||||    
T  10166505 gatttgcttttagccaccaataagattgcaacttaattttatcaa 10166461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 624 - 668
Target Start/End: Complemental strand, 23480964 - 23480920
Alignment:
Q  624 gctttcagccaccaataagattgaagcttaattttatcaaaaaga 668  Q
    ||||| |||||| |||||||||||||||||||||| |||| ||||    
T  23480964 gcttttagccactaataagattgaagcttaattttgtcaagaaga 23480920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 552 - 700
Target Start/End: Complemental strand, 36016819 - 36016666
Alignment:
Q  552 attacaaaatgatttacaaacaaactaaaggattaaacca-----tgtgataagtagaagccaaattaatctgattagctttcagccaccaataagattg 646  Q
    ||||||||||||||  |||||||  |||||||||||||||     ||||||||||| ||||  |||||||| |||| |||||||||||||| ||||||||    
T  36016819 attacaaaatgattctcaaacaagttaaaggattaaaccactacatgtgataagtaaaagcagaattaatccgatttgctttcagccaccattaagattg 36016720  T
Q  647 aagcttaattttatcaaaaagagtttgtaaagagtcctcttgttgatgaaacac 700  Q
    |||||| ||||| || | || | ||||||||||| |||||| || | |||||||    
T  36016719 aagcttgattttgtcgagaaaactttgtaaagaggcctcttttttaggaaacac 36016666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 619 - 661
Target Start/End: Complemental strand, 20505532 - 20505490
Alignment:
Q  619 gattagctttcagccaccaataagattgaagcttaattttatc 661  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  20505532 gattagctttcagccaccagtaagattgaagcttaactttatc 20505490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 619 - 661
Target Start/End: Complemental strand, 26676786 - 26676744
Alignment:
Q  619 gattagctttcagccaccaataagattgaagcttaattttatc 661  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  26676786 gattagctttcagccaccagtaagattgaagcttaactttatc 26676744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 661
Target Start/End: Original strand, 28756690 - 28756733
Alignment:
Q  618 tgattagctttcagccaccaataagattgaagcttaattttatc 661  Q
    ||||| |||||||||||||| |||||||||||||||| ||||||    
T  28756690 tgatttgctttcagccaccagtaagattgaagcttaactttatc 28756733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 593 - 658
Target Start/End: Complemental strand, 2884117 - 2884052
Alignment:
Q  593 gtgataagtagaagccaaattaatctgattagctttcagccaccaataagattgaagcttaatttt 658  Q
    |||||| ||| |||| |||||||| | ||  |||||||||||||| ||| ||||||||||||||||    
T  2884117 gtgataggtaaaagctaaattaattttatgcgctttcagccaccagtaatattgaagcttaatttt 2884052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 618 - 663
Target Start/End: Original strand, 42966902 - 42966947
Alignment:
Q  618 tgattagctttcagccaccaataagattgaagcttaattttatcaa 663  Q
    ||||| ||||| |||||  |||||||||||||||||||||||||||    
T  42966902 tgatttgcttttagccattaataagattgaagcttaattttatcaa 42966947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 554 - 700
Target Start/End: Original strand, 30998497 - 30998649
Alignment:
Q  554 tacaaaatgatttacaaacaaactaaaggattaaac-----catgtgataagtagaagccaaattaatctgattagctttcagccaccaataagattgaa 648  Q
    |||||||||||| |||| ||| ||||||| |||| |     ||||||||||||| |||| ||||||| | |||| |||||||| || ||||| |||||||    
T  30998497 tacaaaatgattcacaagcaagctaaagggttaagctaccacatgtgataagtaaaagcaaaattaagccgattcgctttcagacatcaatatgattgaa 30998596  T
Q  649 gcttaattttatcaaaaagagtttgt-aaagagtcctcttgttgatgaaacac 700  Q
     ||||||||| |||| |||| ||||| ||||||  ||||| ||||||||||||    
T  30998597 acttaattttgtcaagaagaatttgtaaaagaggtctctttttgatgaaacac 30998649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 619 - 661
Target Start/End: Original strand, 9932309 - 9932351
Alignment:
Q  619 gattagctttcagccaccaataagattgaagcttaattttatc 661  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  9932309 gattagctttcagccaccagtaagattgaagcttaactttatc 9932351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 619 - 661
Target Start/End: Original strand, 25582794 - 25582836
Alignment:
Q  619 gattagctttcagccaccaataagattgaagcttaattttatc 661  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  25582794 gattagctttcagccaccagtaagattgaagcttaactttatc 25582836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 604 - 658
Target Start/End: Complemental strand, 27529612 - 27529558
Alignment:
Q  604 aagccaaattaatctgattagctttcagccaccaataagattgaagcttaatttt 658  Q
    |||| ||||| |||||||| |||||||||||||| || ||||||| |||||||||    
T  27529612 aagcaaaattgatctgatttgctttcagccaccactatgattgaaacttaatttt 27529558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 619 - 661
Target Start/End: Original strand, 26369148 - 26369190
Alignment:
Q  619 gattagctttcagccaccaataagattgaagcttaattttatc 661  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  26369148 gattagctttcagccaccagtaagattgaagcttaactttatc 26369190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 604 - 668
Target Start/End: Original strand, 15259086 - 15259150
Alignment:
Q  604 aagccaaattaatctgattagctttcagccaccaataagattgaagcttaattttatcaaaaaga 668  Q
    |||| |||||||| ||||| ||||||| ||| ||  ||||||||||||||||||| |||| ||||    
T  15259086 aagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattttctcaagaaga 15259150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 624 - 668
Target Start/End: Original strand, 35101388 - 35101432
Alignment:
Q  624 gctttcagccaccaataagattgaagcttaattttatcaaaaaga 668  Q
    ||||||| ||| ||||||||||||||||||||||| |||| ||||    
T  35101388 gctttcaaccatcaataagattgaagcttaattttgtcaagaaga 35101432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 619 - 661
Target Start/End: Complemental strand, 40850701 - 40850659
Alignment:
Q  619 gattagctttcagccaccaataagattgaagcttaattttatc 661  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  40850701 gattagctttcagccaccagtaagattgaagcttaactttatc 40850659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 619 - 661
Target Start/End: Original strand, 47590668 - 47590710
Alignment:
Q  619 gattagctttcagccaccaataagattgaagcttaattttatc 661  Q
    |||| ||||||||||||||||||||||||||||||| ||||||    
T  47590668 gatttgctttcagccaccaataagattgaagcttaactttatc 47590710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 619 - 661
Target Start/End: Complemental strand, 56024932 - 56024890
Alignment:
Q  619 gattagctttcagccaccaataagattgaagcttaattttatc 661  Q
    |||| |||||||||||||| |||||||||||||||| ||||||    
T  56024932 gatttgctttcagccaccagtaagattgaagcttaactttatc 56024890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 619 - 661
Target Start/End: Original strand, 10436644 - 10436686
Alignment:
Q  619 gattagctttcagccaccaataagattgaagcttaattttatc 661  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  10436644 gattagctttcagccaccagtaagattgaagcttaactttatc 10436686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 661
Target Start/End: Complemental strand, 15029969 - 15029926
Alignment:
Q  618 tgattagctttcagccaccaataagattgaagcttaattttatc 661  Q
    ||||| ||||||| ||||||||||||||||||||||| ||||||    
T  15029969 tgattcgctttcaaccaccaataagattgaagcttaactttatc 15029926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 624 - 697
Target Start/End: Complemental strand, 22649573 - 22649500
Alignment:
Q  624 gctttcagccaccaataagattgaagcttaattttatcaaaaagagtttgtaaagagtcctcttgttgatgaaa 697  Q
    ||||||||||||||| ||| ||||||||||||||| ||||  ||  ||||||| |||  |||||||||| ||||    
T  22649573 gctttcagccaccaaaaagtttgaagcttaattttgtcaagtagtttttgtaacgaggactcttgttgacgaaa 22649500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 619 - 661
Target Start/End: Complemental strand, 8124015 - 8123973
Alignment:
Q  619 gattagctttcagccaccaataagattgaagcttaattttatc 661  Q
    |||||||||||| |||||| |||||||||||||||| ||||||    
T  8124015 gattagctttcaaccaccagtaagattgaagcttaactttatc 8123973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 619 - 661
Target Start/End: Original strand, 40858233 - 40858275
Alignment:
Q  619 gattagctttcagccaccaataagattgaagcttaattttatc 661  Q
    |||||||||||||||| || |||||||||||||||| ||||||    
T  40858233 gattagctttcagccatcagtaagattgaagcttaactttatc 40858275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 619 - 661
Target Start/End: Complemental strand, 6029217 - 6029175
Alignment:
Q  619 gattagctttcagccaccaataagattgaagcttaattttatc 661  Q
    |||| |||||||||||| |||||||||||||||||| ||||||    
T  6029217 gattcgctttcagccactaataagattgaagcttaactttatc 6029175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 619 - 664
Target Start/End: Original strand, 18972823 - 18972868
Alignment:
Q  619 gattagctttcagccaccaataagattgaagcttaattttatcaaa 664  Q
    |||| |||||||||||| | |||||||||||||||| |||||||||    
T  18972823 gatttgctttcagccacgagtaagattgaagcttaactttatcaaa 18972868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 624 - 661
Target Start/End: Original strand, 30987220 - 30987257
Alignment:
Q  624 gctttcagccaccaataagattgaagcttaattttatc 661  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  30987220 gctttcagccaccaatatgattgaagtttaattttatc 30987257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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