View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_high_10 (Length: 599)
Name: NF4445_high_10
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 10 - 338
Target Start/End: Complemental strand, 33535492 - 33535164
Alignment:
| Q |
10 |
catcatcatatatatcaatcaccaaatcttgaacttttttcaacaggagaagttgttaccagctatcataacaaatttgttattaatttcaaggctagga |
109 |
Q |
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| T |
33535492 |
catcatcatatatatcaatcaccaaatcttgaacttttttcaacaggagaagttgttaccagctatcataacaaatttgttattaatttcaaggctagga |
33535393 |
T |
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| Q |
110 |
aagatacaaattataacaattattaatcatatttgatttcataatggaatgtggttaattttggccgacgtgttattatattatatgtcaattcattttg |
209 |
Q |
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| T |
33535392 |
aagatacatattataacaattattaatcatatttgatttcataatggaatgtggttaattttggccgacgtgttattatattatatgtcaattcattttg |
33535293 |
T |
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| Q |
210 |
tttcccgcacaaaactcatttctctatttgataattgtttgcagtgattagctaggagaaatcatatatttgcttttcaatgctttatttttggtcaaaa |
309 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33535292 |
tttcccacacaaaactcatttctctatttgataattgtttgcagtgattagctaggagaaatcatatatttgcttttcaatgctttatttttggtcaaaa |
33535193 |
T |
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| Q |
310 |
agtattctcttccaaattacacgtaaacc |
338 |
Q |
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|||||||||||| |||||||||||||||| |
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| T |
33535192 |
agtattctcttctaaattacacgtaaacc |
33535164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 429 - 581
Target Start/End: Complemental strand, 33535077 - 33534926
Alignment:
| Q |
429 |
cttcattatcgaatgcatagaatgatgtaatagttcatacctaagctcctttcattctttaacttcaagtttcatgccaagaatctagtatatgaatatg |
528 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33535077 |
cttcattatcgaatgcatagaatgatgtaatagttcatacctaagctcctt-cattctttaacttcaagtttcatgccaagaatctagtatatgaatatg |
33534979 |
T |
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| Q |
529 |
actatttcaaagtctctatgtactatatatcaacctaccaaacgtgtaccata |
581 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33534978 |
actatttcaaagtctctatgtactatatatcaacctaccaaacgtgtaccata |
33534926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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