View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_high_104 (Length: 247)
Name: NF4445_high_104
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_high_104 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 12603821 - 12603590
Alignment:
| Q |
1 |
tcatattttgtctctatcatatcctgaccattaaacagaactaaatgtacatcattcttcataaaataaattaactgtagatctccctttaataaaaaca |
100 |
Q |
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| T |
12603821 |
tcatatcttgtctctatcatatcctgaccattaaacagaactaaatgtacatgattcttcataaaataaattaacggtagatatccctttaataaaaaca |
12603722 |
T |
|
| Q |
101 |
gttattttacatcttgtttcgttacctgttagagtctcatgacatcaccaagttatcgtaacaacctacttc-aagcttattatcatgcacattcattag |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12603721 |
gttattttacatcttgtttcgttacctgttagagtctcataacatcaccaagttatcgtaacaacctacttcaaagcttattatcatgcacattcattag |
12603622 |
T |
|
| Q |
200 |
taggcaggagcaacataaattaatagccaaac |
231 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
12603621 |
taggcaggagcaacataaattaatagccaaac |
12603590 |
T |
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