View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_high_107 (Length: 244)
Name: NF4445_high_107
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_high_107 |
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| [»] scaffold0489 (1 HSPs) |
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| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: scaffold0489 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0489
Description:
Target: scaffold0489; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 9882 - 9671
Alignment:
| Q |
13 |
aggagcacagagcacaacacaagatcatcatggccttaactcatccaaatctgattatgcttctcgatttaggtcatctcatgaaggaaacaacagcttc |
112 |
Q |
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| T |
9882 |
aggagcacaaagcacaacacaagatcatcatggccttaactcatccaaatctgattatgcttctcgatttaggtcatctcatgaaggaaacaacagcttc |
9783 |
T |
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| Q |
113 |
aacttgaacacaaaagagggtctcttcttccaccaagaggaaaggattaatattaaagcaaacatggaaacgcatgttcctcttactttgcttgaaaaat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9782 |
aacttgaacacaaaagagggtctcttcttccaccaagaggaaaggattaatattaaagcaaacatggaaacgcatgttcctcttactttgcttgaaaaat |
9683 |
T |
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| Q |
213 |
ggctttttgaag |
224 |
Q |
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|||||||||||| |
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| T |
9682 |
ggctttttgaag |
9671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 11146 - 11357
Alignment:
| Q |
13 |
aggagcacagagcacaacacaagatcatcatggccttaactcatccaaatctgattatgcttctcgatttaggtcatctcatgaaggaaacaacagcttc |
112 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11146 |
aggagcacaaagcacaacacaagatcatcatggccttaactcatccaaatctgattatgcttctcgatttaggtcatctcatgaaggaaacaacagcttc |
11245 |
T |
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| Q |
113 |
aacttgaacacaaaagagggtctcttcttccaccaagaggaaaggattaatattaaagcaaacatggaaacgcatgttcctcttactttgcttgaaaaat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11246 |
aacttgaacacaaaagagggtctcttcttccaccaagaggaaaggattaatattaaagcaaacatggaaacgcatgttcctcttactttgcttgaaaaat |
11345 |
T |
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| Q |
213 |
ggctttttgaag |
224 |
Q |
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|||||||||||| |
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| T |
11346 |
ggctttttgaag |
11357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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