View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4445_high_108 (Length: 243)

Name: NF4445_high_108
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4445_high_108
NF4445_high_108
[»] chr7 (18 HSPs)
chr7 (1-227)||(21773501-21773727)
chr7 (1-227)||(21787029-21787255)
chr7 (55-197)||(21658131-21658273)
chr7 (1-228)||(21789787-21790014)
chr7 (58-228)||(21793482-21793652)
chr7 (55-220)||(21630448-21630613)
chr7 (91-227)||(15715338-15715473)
chr7 (46-228)||(21994906-21995088)
chr7 (54-225)||(21666986-21667157)
chr7 (91-227)||(21765634-21765770)
chr7 (91-224)||(21706008-21706141)
chr7 (91-225)||(21803490-21803624)
chr7 (118-222)||(21698175-21698279)
chr7 (147-224)||(21653621-21653698)
chr7 (1-106)||(21648172-21648277)
chr7 (1-72)||(21728063-21728134)
chr7 (1-59)||(21683290-21683348)
chr7 (102-195)||(21746367-21746454)
[»] scaffold0182 (1 HSPs)
scaffold0182 (91-223)||(26978-27110)


Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 21773501 - 21773727
Alignment:
Q  1 atcataagtactgacttggtacctaatgcagacacatatttagaggttagagccaaaatacattatcattaccgtaatagatgtaatacatggatagcgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  21773501 atcataagtactgacttggtacctaatgcagacacatatttagaggttagagccaaaatacatgatcattaccgtaatagatgcaatacatggatagcgc 21773600  T
Q  101 agggttttcgcacttacttcagcagtccttgggccattattgcattcattgctgctcttatcgcgcttgttcttactttcattcagacatggtttacggt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21773601 agggttttcgcacttacttcagcagtccttgggccattattgcattcattgctgctctcatcgcgcttgttcttactttcattcagacatggtttacggt 21773700  T
Q  201 taacccgccaagcaaataaaggtggtt 227  Q
    |||||||||||||||||||||||||||    
T  21773701 taacccgccaagcaaataaaggtggtt 21773727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 21787029 - 21787255
Alignment:
Q  1 atcataagtactgacttggtacctaatgcagacacatatttagaggttagagccaaaatacattatcattaccgtaatagatgtaatacatggatagcgc 100  Q
    ||||||||||||||||||||||||||  |||| |||||||| || |||||||||||||||||| |||||||  |||||||||| ||||||||||||||      
T  21787029 atcataagtactgacttggtacctaactcagaaacatattttgaagttagagccaaaatacatgatcattattgtaatagatgcaatacatggatagcag 21787128  T
Q  101 agggttttcgcacttacttcagcagtccttgggccattattgcattcattgctgctcttatcgcgcttgttcttactttcattcagacatggtttacggt 200  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||  |||  || |||||||||||||||||||| ||||||||||||||    
T  21787129 agggttttcacacttacttcagcaatccttgggccattattgcattcattgctgcgtttactgcccttgttcttactttcattcaaacatggtttacggt 21787228  T
Q  201 taacccgccaagcaaataaaggtggtt 227  Q
    ||||||| | |||||||||||||||||    
T  21787229 taacccggctagcaaataaaggtggtt 21787255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 55 - 197
Target Start/End: Original strand, 21658131 - 21658273
Alignment:
Q  55 aaaatacattatcattaccgtaatagatgtaatacatggatagcgcagggttttcgcacttacttcagcagtccttgggccattattgcattcattgctg 154  Q
    ||||||||| |||||||| |||||| ||  ||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||    
T  21658131 aaaatacatgatcattactgtaataaatacaatacttggatagcgcagggttttcatacttacttcagcagtccttgggccattattgcattcactgctg 21658230  T
Q  155 ctcttatcgcgcttgttcttactttcattcagacatggtttac 197  Q
    |  ||||||| ||||||||||||||||||||||||||||||||    
T  21658231 cggttatcgcccttgttcttactttcattcagacatggtttac 21658273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 21789787 - 21790014
Alignment:
Q  1 atcataagtactgacttggtacctaatgcagacacatatttagaggttagagccaaaatacattatcattaccgtaatagatgtaatacatggatagcgc 100  Q
    ||||||||||||||||||||||||||| || | | |||||| || || ||||  ||||||||| | |||||| |||||| ||| || || ||||||||||    
T  21789787 atcataagtactgacttggtacctaatacaaaaatatattttgaagtcagagaaaaaatacatgagcattactgtaataaatgcaagacttggatagcgc 21789886  T
Q  101 agggttttcgcacttacttcagcagtccttgggccattattgcattcattgctgctcttatcgcgcttgttcttactttcattcagacatggtttacggt 200  Q
     |||||||| |||||||||||| | |||||||||||||||||||||| |||||||  ||||||| |||| ||| ||||||||||| ||||||||| ||||    
T  21789887 tgggttttcacacttacttcagtaatccttgggccattattgcattccttgctgcgtttatcgcccttgctctaactttcattcaaacatggtttgcggt 21789986  T
Q  201 taacccgccaagcaaataaaggtggttt 228  Q
    | ||||| |  || | ||||||||||||    
T  21789987 tgacccggcttgctagtaaaggtggttt 21790014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 58 - 228
Target Start/End: Original strand, 21793482 - 21793652
Alignment:
Q  58 atacattatcattaccgtaatagatgtaatacatggatagcgcagggttttcgcacttacttcagcagtccttgggccattattgcattcattgctgctc 157  Q
    |||||| | ||||||||||||| ||  || |  |||||||||||| |||||| |||| ||||||||| |||||||||||||| ||||||| |||||||      
T  21793482 atacataagcattaccgtaataaatacaagaattggatagcgcagcgttttcacactcacttcagcaatccttgggccattactgcattccttgctgcgt 21793581  T
Q  158 ttatcgcgcttgttcttactttcattcagacatggtttacggttaacccgccaagcaaataaaggtggttt 228  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  21793582 ttatcgcccttgctcttactttcattcagacatggtttacggttaacccaccaagaaaataaaggtggttt 21793652  T

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Target: chr7; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 55 - 220
Target Start/End: Original strand, 21630448 - 21630613
Alignment:
Q  55 aaaatacattatcattaccgtaatagatgtaatacatggatagcgcagggttttcgcacttacttcagcagtccttgggccattattgcattcattgctg 154  Q
    |||||| || |||||||| |||||| ||  || || ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  21630448 aaaataaatgatcattactgtaataaatacaagacttggatagcgcagggttttcacacttacttcaacagtccttgggccattattgcattcattgctg 21630547  T
Q  155 ctcttatcgcgcttgttcttactttcattcagacatggtttacggttaacccgccaagcaaataaa 220  Q
    |  || |||  ||||||||||||||||||||||||||||||||  || ||||| | ||||||||||    
T  21630548 cggttgtcgtccttgttcttactttcattcagacatggtttacaattcacccgactagcaaataaa 21630613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 91 - 227
Target Start/End: Original strand, 15715338 - 15715473
Alignment:
Q  91 tggatagcgcagggttttcgcacttacttcagcagtccttgggccattattgcattcattgctgctcttatcgcgcttgttcttactttcattcagacat 190  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||| |||||||  ||||||| |||| ||||||||||||||||||||    
T  15715338 tggatagcgcagggttttcacacttacttcagcaatccttgggccattactgcattccttgctgcgtttatcgcccttgctcttactttcattcagacat 15715437  T
Q  191 ggtttacggttaacccgccaagcaaataaaggtggtt 227  Q
    | ||||| ||||||||||| |||||| ||||||||||    
T  15715438 gatttactgttaacccgcctagcaaa-aaaggtggtt 15715473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 46 - 228
Target Start/End: Original strand, 21994906 - 21995088
Alignment:
Q  46 gttagagccaaaatacattatcattaccgtaatagatgtaatacatggatagcgcagggttttcgcacttacttcagcagtccttgggccattattgcat 145  Q
    ||||||||||||||| || | |||||| |||||||||| || |||||||||| |||||||||   |||||||||||||| |||||||||| | |||||||    
T  21994906 gttagagccaaaatagatgaacattactgtaatagatggaagacatggatagggcagggtttgaacacttacttcagcaatccttgggccttcattgcat 21995005  T
Q  146 tcattgctgctcttatcgcgcttgttcttactttcattcagacatggtttacggttaacccgccaagcaaataaaggtggttt 228  Q
    || |||||||  ||||||| |||| ||||||||| ||||||||||||||||| ||| | ||| | || |||||||||||||||    
T  21995006 tcgttgctgcatttatcgcccttgctcttactttaattcagacatggtttacagttcaaccggctagtaaataaaggtggttt 21995088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 54 - 225
Target Start/End: Original strand, 21666986 - 21667157
Alignment:
Q  54 caaaatacattatcattaccgtaatagatgtaatacatggatagcgcagggttttcgcacttacttcagcagtccttgggccattattgcattcattgct 153  Q
    ||||||| || | |||||| |||||| ||  || || |||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||| |||||    
T  21666986 caaaataaatgagcattactgtaataaatacaagacttggatagcacagggttttcacacttacttcagcagtccttgggccattactgcattccttgct 21667085  T
Q  154 gctcttatcgcgcttgttcttactttcattcagacatggtttacggttaacccgccaagcaaataaaggtgg 225  Q
    ||  |||||||  |||||||||||||||||||||||||||||||| || ||||| |  || |||||||||||    
T  21667086 gcgtttatcgccattgttcttactttcattcagacatggtttacgattcacccggcttgctaataaaggtgg 21667157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 91 - 227
Target Start/End: Original strand, 21765634 - 21765770
Alignment:
Q  91 tggatagcgcagggttttcgcacttacttcagcagtccttgggccattattgcattcattgctgctcttatcgcgcttgttcttactttcattcagacat 190  Q
    |||||||||| |||||||||||||||||||| || ||||||| || ||||||| ||| |||||||  |||  || |||| ||||||||||||||||||||    
T  21765634 tggatagcgctgggttttcgcacttacttcaacaatccttggaccgttattgccttccttgctgcatttactgcccttgctcttactttcattcagacat 21765733  T
Q  191 ggtttacggttaacccgccaagcaaataaaggtggtt 227  Q
    ||||||||||| ||||| | ||||||||| |||||||    
T  21765734 ggtttacggttcacccggctagcaaataatggtggtt 21765770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 91 - 224
Target Start/End: Original strand, 21706008 - 21706141
Alignment:
Q  91 tggatagcgcagggttttcgcacttacttcagcagtccttgggccattattgcattcattgctgctcttatcgcgcttgttcttactttcattcagacat 190  Q
    |||||||||| ||||||||| |||||||| | || |||||||||| ||||||| ||| |||||||| |||  || |||| ||||||||||||||||||||    
T  21706008 tggatagcgctgggttttcgtacttacttaaacaatccttgggccgttattgccttccttgctgcttttactgcccttgctcttactttcattcagacat 21706107  T
Q  191 ggtttacggttaacccgccaagcaaataaaggtg 224  Q
    ||||||| ||| ||||| | | ||||||||||||    
T  21706108 ggtttacagttcacccggctaacaaataaaggtg 21706141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 91 - 225
Target Start/End: Complemental strand, 21803624 - 21803490
Alignment:
Q  91 tggatagcgcagggttttcgcacttacttcagcagtccttgggccattattgcattcattgctgctcttatcgcgcttgttcttactttcattcagacat 190  Q
    |||||||||  |||||||||||||||||||| || ||||||| |||||||||||||| |||||||  |||| || || | ||||||||||||||||||||    
T  21803624 tggatagcgttgggttttcgcacttacttcaacaatccttggaccattattgcattccttgctgcatttattgccctcgctcttactttcattcagacat 21803525  T
Q  191 ggtttacggttaacccgccaagcaaataaaggtgg 225  Q
     ||||||  || ||||| | |||| ||||||||||    
T  21803524 tgtttacaattcacccgactagcacataaaggtgg 21803490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 21698175 - 21698279
Alignment:
Q  118 ttcagcagtccttgggccattattgcattcattgctgctcttatcgcgcttgttcttactttcattcagacatggtttacggttaacccgccaagcaaat 217  Q
    ||||||||||||||| ||||||||||||||| ||||||   |||||| |||||||||||| |||||||||||| ||||||| || ||||| |  ||||||    
T  21698175 ttcagcagtccttggaccattattgcattcagtgctgcgtctatcgcccttgttcttactctcattcagacattgtttacgattcacccggcttgcaaat 21698274  T
Q  218 aaagg 222  Q
    |||||    
T  21698275 aaagg 21698279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 21653621 - 21653698
Alignment:
Q  147 cattgctgctcttatcgcgcttgttcttactttcattcagacatggtttacggttaacccgccaagcaaataaaggtg 224  Q
    |||||||||  ||||||| |||| ||||||||||||||||||||||||||||||| ||||||| | ||||||||||||    
T  21653621 cattgctgcggttatcgcccttgctcttactttcattcagacatggtttacggtttacccgcctaacaaataaaggtg 21653698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 21648172 - 21648277
Alignment:
Q  1 atcataagtactgacttggtacctaatgcagacacatattt-agaggttagagccaaaatacattatcattaccgtaatagatgtaatacatggatagcg 99  Q
    |||||| |||| |||||| |||||||| |||| |||||||| |||| |||||||||||||| |||||||||||||||||| ||| || || ||||||| |    
T  21648172 atcataggtaccgacttgatacctaatacagaaacatatttcagag-ttagagccaaaatagattatcattaccgtaataaatgcaagacttggatagtg 21648270  T
Q  100 cagggtt 106  Q
    | |||||    
T  21648271 ctgggtt 21648277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 21728063 - 21728134
Alignment:
Q  1 atcataagtactgacttggtacctaatgcagacacatatttagaggttagagccaaaatacattatcattac 72  Q
    ||||||||||||||||||||||||||  |||| |||||||| || |||| || |||||| | | ||||||||    
T  21728063 atcataagtactgacttggtacctaacacagaaacatattttgaagttaaagacaaaatgcttgatcattac 21728134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 21683290 - 21683348
Alignment:
Q  1 atcataagtactgacttggtacctaatgcagacacatatttagaggttagagccaaaat 59  Q
    |||||| |||||||||||||||||||  |||| |||||||| || |||| |||||||||    
T  21683290 atcataggtactgacttggtacctaacccagaaacatattttgaagttaaagccaaaat 21683348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 21746367 - 21746454
Alignment:
Q  102 gggttttcgcacttacttcagcagtccttgggccattattgcattcattgctgctcttatcgcgcttgttcttactttcattcagacatggttt 195  Q
    ||||||| |||||||||||| || |||||||||| ||||||||||| || ||||  |||| || ||||      ||||||||||||||||||||    
T  21746367 gggtttttgcacttacttcaacaatccttgggccgttattgcattcgttcctgcatttattgcccttg------ctttcattcagacatggttt 21746454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 91 - 223
Target Start/End: Original strand, 26978 - 27110
Alignment:
Q  91 tggatagcgcagggttttcgcacttacttcagcagtccttgggccattattgcattcattgctgctcttatcgcgcttgttcttactttcattcagacat 190  Q
    |||||||||  |||||||||||||||||||| || ||||||| || ||||||||||| ||| |||  |||  || |||| ||||||||||||||||||||    
T  26978 tggatagcgttgggttttcgcacttacttcaacaatccttggaccgttattgcattccttgttgcatttactgcccttgctcttactttcattcagacat 27077  T
Q  191 ggtttacggttaacccgccaagcaaataaaggt 223  Q
    ||||||||||| ||||| | |||||||||||||    
T  27078 ggtttacggttcacccggctagcaaataaaggt 27110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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