View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_high_109 (Length: 243)
Name: NF4445_high_109
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_high_109 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 51733043 - 51733285
Alignment:
| Q |
1 |
gcacagatgcgggtgagctatcaacttgaatatggggaccaccctgtgactcttaaactatgaagcaccgacacagacaccgaatacgatactgacaggt |
100 |
Q |
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| T |
51733043 |
gcacagatgcgggtgagctatcaacatgaatatggggaccaccctgtgactcttaaactatgaagcaccgacacagacaccgaatacgatactgacaggt |
51733142 |
T |
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| Q |
101 |
tgacaccgataataacttgagaaaatagaataattgaacgttaccagatgtgtcggtgttgtgtcggtgctacaaagctcctagatacggcctattgatg |
200 |
Q |
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| T |
51733143 |
tgacaccgataataacttgagaaaatagaataattgaacgttaccagatgtgtcggtgttgtgtcggtgctacaaagctcctagatatggcctattgatg |
51733242 |
T |
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| Q |
201 |
aatcaattcttttttgcagattaacggccgttcaattcaagac |
243 |
Q |
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| T |
51733243 |
aatcaattcttttttgcagattaacggccgttcaattcaagac |
51733285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 164
Target Start/End: Complemental strand, 18268063 - 18268002
Alignment:
| Q |
103 |
acaccgataataacttgagaaaatagaataattgaacgttaccagatgtgtcggtgttgtgt |
164 |
Q |
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| T |
18268063 |
acactgataataatttgagaaaatgaattaattgaacgtaatcacatgtgtcggtgttgtgt |
18268002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 4323960 - 4323900
Alignment:
| Q |
70 |
gacacagacaccgaatacgatactgacaggttgacaccgataataacttgagaaaatagaa |
130 |
Q |
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| T |
4323960 |
gacacggacaccgaacacgatactgacacgttgacaacgataataatttaagaaaatagaa |
4323900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 174
Target Start/End: Original strand, 7936883 - 7936964
Alignment:
| Q |
91 |
actgacaggttgacaccgataataacttgagaaaatagaataattgaacgttaccagatgtgtcggtgttgtgtcggtgctaca |
174 |
Q |
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| T |
7936883 |
actgacatgttgacaccggcaataa--tgagaaaatagaataattgaatgtcagcacatgtgtcggtgtcatgtcagtgctaca |
7936964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 9483382 - 9483437
Alignment:
| Q |
100 |
ttgacaccgataataacttgagaaaatagaataattgaacgttaccagatgtgtcg |
155 |
Q |
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| T |
9483382 |
ttgacaccaataataatttgagaaaatagaataattgaatgtaaccatatgtgtcg |
9483437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 31924417 - 31924462
Alignment:
| Q |
93 |
tgacaggttgacaccgataataacttgagaaaatagaataattgaa |
138 |
Q |
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| T |
31924417 |
tgacacgttgacaccgataataatttaagaaaatagaacaattgaa |
31924462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 28452602 - 28452649
Alignment:
| Q |
120 |
agaaaatagaataattgaacgttaccagatgtgtcggtgttgtgtcgg |
167 |
Q |
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| T |
28452602 |
agaaaataaaataattgaatgttaccacatgtgttggtgttgtgtcgg |
28452649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 41542562 - 41542507
Alignment:
| Q |
70 |
gacacagacaccgaatacgatactgacaggttgacaccgataataacttgagaaaa |
125 |
Q |
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| T |
41542562 |
gacacggacaccggttatgatactgacacgttgacaccgataataatttgagaaaa |
41542507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 19625975 - 19625927
Alignment:
| Q |
117 |
ttgagaaaatagaataattgaacgttaccagatgtgtcggtgttgtgtc |
165 |
Q |
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| T |
19625975 |
ttgagaaaatggaataattgaatgtaaccacatgtgtcagtgttgtgtc |
19625927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 164
Target Start/End: Original strand, 22402367 - 22402446
Alignment:
| Q |
86 |
acgatactgacaggttgacaccgataataacttgagaaaatagaa-taattgaacgttaccagatgtgtcggtgttgtgt |
164 |
Q |
| |
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|||||||||||| || || |||| |||||| |||||||||||||| | |||||| || |||| |||||||||||| |||| |
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| T |
22402367 |
acgatactgacatgtagagaccggtaataaattgagaaaatagaagtgattgaatgtaaccacatgtgtcggtgtcgtgt |
22402446 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 17831622 - 17831566
Alignment:
| Q |
70 |
gacacagacaccgaatacgatactgacaggttgacaccgataataacttgagaaaat |
126 |
Q |
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| T |
17831622 |
gacacagacaccggatacgacactgacacgccgacaccgctaataatttgagaaaat |
17831566 |
T |
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