View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4445_high_111 (Length: 242)

Name: NF4445_high_111
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4445_high_111
NF4445_high_111
[»] chr6 (5 HSPs)
chr6 (14-130)||(23911482-23911598)
chr6 (58-117)||(14482328-14482387)
chr6 (79-122)||(14096476-14096519)
chr6 (61-124)||(14123484-14123549)
chr6 (79-130)||(14482287-14482339)
[»] chr7 (2 HSPs)
chr7 (12-130)||(21613917-21614035)
chr7 (79-130)||(21613831-21613882)
[»] chr4 (16 HSPs)
chr4 (12-130)||(3394020-3394138)
chr4 (13-130)||(24607686-24607803)
chr4 (12-130)||(17211986-17212104)
chr4 (74-117)||(13855147-13855190)
chr4 (79-130)||(13867177-13867228)
chr4 (68-117)||(31324812-31324861)
chr4 (73-117)||(13866918-13866962)
chr4 (60-130)||(18413303-18413375)
chr4 (79-130)||(13855239-13855290)
chr4 (79-130)||(13855469-13855520)
chr4 (79-130)||(13867006-13867057)
chr4 (75-117)||(13866975-13867017)
chr4 (78-130)||(373306-373359)
chr4 (84-117)||(23620085-23620118)
chr4 (79-130)||(3394174-3394226)
chr4 (79-130)||(24607838-24607890)
[»] chr1 (8 HSPs)
chr1 (12-130)||(5766185-5766303)
chr1 (12-130)||(18843148-18843266)
chr1 (35-103)||(27034676-27034744)
chr1 (59-130)||(16081893-16081965)
chr1 (78-124)||(21484008-21484055)
chr1 (80-124)||(15472280-15472324)
chr1 (79-130)||(22923067-22923118)
chr1 (79-111)||(11788436-11788468)
[»] chr5 (5 HSPs)
chr5 (12-130)||(33371583-33371701)
chr5 (13-130)||(10398483-10398600)
chr5 (166-230)||(33371752-33371816)
chr5 (61-117)||(18921495-18921551)
chr5 (84-130)||(36311106-36311152)
[»] chr3 (11 HSPs)
chr3 (12-130)||(6754909-6755024)
chr3 (12-124)||(6463750-6463860)
chr3 (35-130)||(8629488-8629583)
chr3 (12-87)||(7955245-7955320)
chr3 (61-117)||(15637556-15637612)
chr3 (74-111)||(7955339-7955376)
chr3 (79-130)||(15637661-15637713)
chr3 (79-130)||(1637921-1637972)
chr3 (12-47)||(20375355-20375390)
chr3 (61-122)||(33448741-33448803)
chr3 (79-130)||(6463673-6463725)
[»] chr2 (9 HSPs)
chr2 (12-130)||(16708572-16708689)
chr2 (15-104)||(20148863-20148952)
chr2 (33-130)||(6902562-6902659)
chr2 (12-80)||(16708122-16708190)
chr2 (83-124)||(26616886-26616927)
chr2 (58-109)||(15891173-15891224)
chr2 (79-117)||(28745842-28745880)
chr2 (79-111)||(12764383-12764415)
chr2 (79-111)||(28272808-28272840)
[»] chr8 (4 HSPs)
chr8 (58-109)||(31171376-31171428)
chr8 (78-111)||(26140993-26141026)
chr8 (79-130)||(12504179-12504230)
chr8 (79-111)||(10205420-10205452)


Alignment Details
Target: chr6 (Bit Score: 109; Significance: 6e-55; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 23911482 - 23911598
Alignment:
Q  14 gaaggaatttgatgtgataatatatatagttgatatacatgttgtttatgtaaagtaatgtaacttttattcgaatttattcaatacgcaactttatttg 113  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23911482 gaaggaatttgatgtgataacatatatagttgatatacatgttgtttatgtaatgtaatgtaacttttattcgaatttattcaatacgcaactttatttg 23911581  T
Q  114 aattcacgctgagttta 130  Q
    |||||||||||||||||    
T  23911582 aattcacgctgagttta 23911598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 117
Target Start/End: Complemental strand, 14482387 - 14482328
Alignment:
Q  58 tttatgtaaagtaatgtaacttttattcgaatttattcaatacgcaactttatttgaatt 117  Q
    ||||||||| |||| ||||||||||||||| |||||| ||||| |||||||||| |||||    
T  14482387 tttatgtaatgtaaagtaacttttattcgactttatttaatacacaactttattcgaatt 14482328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 14096476 - 14096519
Alignment:
Q  79 tttattcgaatttattcaatacgcaactttatttgaattcacgc 122  Q
    |||| ||||||||||||||||| |||||||||| ||||||||||    
T  14096476 tttagtcgaatttattcaatacacaactttattcgaattcacgc 14096519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 124
Target Start/End: Original strand, 14123484 - 14123549
Alignment:
Q  61 atgtaaagtaatgtaactttt-attcgaatttattcaatacgcaa-ctttatttgaattcacgctg 124  Q
    |||||| |||||||| ||||| |||||||||||||||||||| ||  |||||| ||||||||||||    
T  14123484 atgtaatgtaatgtacctttttattcgaatttattcaatacgtaatttttattcgaattcacgctg 14123549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 14482339 - 14482287
Alignment:
Q  79 tttattcgaatttattcaatacgcaacttt-atttgaattcacgctgagttta 130  Q
    |||||||||||||||| ||||| ||| ||| ||| ||||||||||||||||||    
T  14482339 tttattcgaatttatttaatacacaatttttattcgaattcacgctgagttta 14482287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 21614035 - 21613917
Alignment:
Q  12 atgaaggaatttgatgtgataatatatatagttgatatacatgttgtttatgtaaagtaatgtaacttttattcgaatttattcaatacgcaactttatt 111  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21614035 atgaaggaatttgatgtgataacatatatagttgatatacatgttgtttatgtaaagtaatgtaagttttattcgaatttattcaatacgcaactttatt 21613936  T
Q  112 tgaattcacgctgagttta 130  Q
     ||||||||||||||||||    
T  21613935 cgaattcacgctgagttta 21613917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 21613882 - 21613831
Alignment:
Q  79 tttattcgaatttattcaatacgcaactttatttgaattcacgctgagttta 130  Q
    ||||||| ||||||||||||||||||||||||  ||||||||||||| ||||    
T  21613882 tttattcaaatttattcaatacgcaactttatacgaattcacgctgaattta 21613831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 3394020 - 3394138
Alignment:
Q  12 atgaaggaatttgatgtgataatatatatagttgatatacatgttgtttatgtaaagtaatgtaacttttattcgaatttattcaatacgcaactttatt 111  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  3394020 atgaaggaatttgatgtgataacatatatagttgatatacatgttgtttatgtaatgtaatgtaacttttattcgaatttattcaatacgcagctttatt 3394119  T
Q  112 tgaattcacgctgagttta 130  Q
     ||||||||||||||||||    
T  3394120 cgaattcacgctgagttta 3394138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 24607686 - 24607803
Alignment:
Q  13 tgaaggaatttgatgtgataatatatatagttgatatacatgttgtttatgtaaagtaatgtaacttttattcgaatttattcaatacgcaactttattt 112  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||| |||||||||||     
T  24607686 tgaaggaatttgatgtgataacatatatagttgatatacatgttgttcatataaagtaatgtaatttttattcgaatttattcaatatgcaactttattc 24607785  T
Q  113 gaattcacgctgagttta 130  Q
    ||||||||||||||||||    
T  24607786 gaattcacgctgagttta 24607803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 17211986 - 17212104
Alignment:
Q  12 atgaaggaatttgatgtgataatatatatagttgatatacatgttgtttatgtaaagtaatgtaacttttattcgaatttattcaatacgcaactttatt 111  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||| ||    
T  17211986 atgaaggaatttgatgtgataacatatatagtttatatacatgttgtttatgtagtgtaatgtaacttttattcgaatttattcaatacgcaaatttttt 17212085  T
Q  112 tgaattcacgctgagttta 130  Q
     ||||||||||||||||||    
T  17212086 cgaattcacgctgagttta 17212104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 117
Target Start/End: Original strand, 13855147 - 13855190
Alignment:
Q  74 taacttttattcgaatttattcaatacgcaactttatttgaatt 117  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  13855147 taacttttattcgaatttattcaatacacaactttatttgaatt 13855190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 13867177 - 13867228
Alignment:
Q  79 tttattcgaatttattcaatacgcaactttatttgaattcacgctgagttta 130  Q
    |||||||||||||||| ||||||| |||||||| ||||||||||||||||||    
T  13867177 tttattcgaatttatttaatacgctactttattcgaattcacgctgagttta 13867228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 31324812 - 31324861
Alignment:
Q  68 gtaatgtaacttttattcgaatttattcaatacgcaactttatttgaatt 117  Q
    |||||||||||||||||| |||||||| |||| |||||||||||||||||    
T  31324812 gtaatgtaacttttattcaaatttatttaatatgcaactttatttgaatt 31324861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 13866918 - 13866962
Alignment:
Q  73 gtaacttttattcgaatttattcaatacgcaactttatttgaatt 117  Q
    |||||||||||||||||||||| |||||||||||||||| |||||    
T  13866918 gtaacttttattcgaatttatttaatacgcaactttattcgaatt 13866962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 18413303 - 18413375
Alignment:
Q  60 tatgtaaagtaatgtaacttttattcgaatttattc-aatacgcaa-ctttatttgaattcacgctgagttta 130  Q
    ||||||| ||||||||||||||||| |||||||||| |||| |||| ||||||| ||||||||| ||||||||    
T  18413303 tatgtaatgtaatgtaacttttatttgaatttattcaaatatgcaatctttattcgaattcacgatgagttta 18413375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 13855239 - 13855290
Alignment:
Q  79 tttattcgaatttattcaatacgcaactttatttgaattcacgctgagttta 130  Q
    |||||||||||||||| ||||||  |||||||| ||||||||||||||||||    
T  13855239 tttattcgaatttatttaatacgttactttattcgaattcacgctgagttta 13855290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 13855469 - 13855520
Alignment:
Q  79 tttattcgaatttattcaatacgcaactttatttgaattcacgctgagttta 130  Q
    ||||||| |||||||| || |||| |||||||| ||||||||||||||||||    
T  13855469 tttattcaaatttatttaagacgctactttattcgaattcacgctgagttta 13855520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 13867006 - 13867057
Alignment:
Q  79 tttattcgaatttattcaatacgcaactttatttgaattcacgctgagttta 130  Q
    |||||| ||||||||| ||||||| ||||| || ||||||||||||||||||    
T  13867006 tttatttgaatttatttaatacgctactttgttcgaattcacgctgagttta 13867057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 13866975 - 13867017
Alignment:
Q  75 aacttttattcgaatttattcaatacgcaactttatttgaatt 117  Q
    |||||||||||||||||||| |||||||  |||||||||||||    
T  13866975 aacttttattcgaatttatttaatacgcttctttatttgaatt 13867017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 373359 - 373306
Alignment:
Q  78 ttttattcgaatttattcaatacgcaacttt-atttgaattcacgctgagttta 130  Q
    |||||||| |||||||| ||||||||| ||| ||||||||||||||| ||||||    
T  373359 ttttattcaaatttatttaatacgcaatttttatttgaattcacgctaagttta 373306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 117
Target Start/End: Complemental strand, 23620118 - 23620085
Alignment:
Q  84 tcgaatttattcaatacgcaactttatttgaatt 117  Q
    ||||||||||||||||||| ||||||||||||||    
T  23620118 tcgaatttattcaatacgctactttatttgaatt 23620085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 3394174 - 3394226
Alignment:
Q  79 tttattcgaatttattcaatacgcaa-ctttatttgaattcacgctgagttta 130  Q
    |||||||||||||||||||||| |||  |||||| ||||||||||||| ||||    
T  3394174 tttattcgaatttattcaatacacaatttttattcgaattcacgctgaattta 3394226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 24607838 - 24607890
Alignment:
Q  79 tttattcgaatttattcaatacgcaa-ctttatttgaattcacgctgagttta 130  Q
    ||||||||||||||||||||||||||  ||||||  |||||||||||| ||||    
T  24607838 tttattcgaatttattcaatacgcaatttttattctaattcacgctgaattta 24607890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 5766185 - 5766303
Alignment:
Q  12 atgaaggaatttgatgtgataatatatatagttgatatacatgttgtttatgtaaagtaatgtaacttttattcgaatttattcaatacgcaactttatt 111  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  5766185 atgaaggaatttgaggtgataatatatatagttgatatacatgttgtttatgtaatgtaatgtaacttttattcgaatttattcaatacacaactttatt 5766284  T
Q  112 tgaattcacgctgagttta 130  Q
     ||||||||||||||||||    
T  5766285 cgaattcacgctgagttta 5766303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 18843148 - 18843266
Alignment:
Q  12 atgaaggaatttgatgtgataatatatatagttgatatacatgttgtttatgtaaagtaatgtaacttttattcgaatttattcaatacgcaactttatt 111  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||  |||||||||    
T  18843148 atgaaggaatttgatgtgataacgtatatagttgatatacatgttgtttatgtaatgtaatgtaactattattcgaatttattcaatacaaaactttatt 18843247  T
Q  112 tgaattcacgctgagttta 130  Q
     ||||||||||||||||||    
T  18843248 cgaattcacgctgagttta 18843266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 27034744 - 27034676
Alignment:
Q  35 atatatagttgatatacatgttgtttatgtaaagtaatgtaacttttattcgaatttattcaatacgca 103  Q
    |||||||||||| ||||||||||||||||||| |||| ||||| ||||||||||| |||||||||||||    
T  27034744 atatatagttgacatacatgttgtttatgtaatgtaacgtaacctttattcgaatatattcaatacgca 27034676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 16081893 - 16081965
Alignment:
Q  59 ttatgtaaagtaatgtaacttttattcgaatttattcaatacgcaa-ctttatttgaattcacgctgagttta 130  Q
    |||||||| ||||||||||||||||||||| ||||| ||||| |||  |||||||||||||||||||||||||    
T  16081893 ttatgtaacgtaatgtaacttttattcgaaattatttaatacacaatttttatttgaattcacgctgagttta 16081965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 21484055 - 21484008
Alignment:
Q  78 ttttattcgaatttattcaatacgcaa-ctttatttgaattcacgctg 124  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||    
T  21484055 ttttattcgaatttattcaatacgcaatttttatttgaattcacgctg 21484008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 15472280 - 15472324
Alignment:
Q  80 ttattcgaatttattcaatacgcaactttatttgaattcacgctg 124  Q
    ||||||||||||||||||||| ||| |||||| ||||||||||||    
T  15472280 ttattcgaatttattcaatacacaattttattcgaattcacgctg 15472324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 22923118 - 22923067
Alignment:
Q  79 tttattcgaatttattcaatacgcaactttatttgaattcacgctgagttta 130  Q
    |||| ||||||||||||||||| ||| |||||| |||||||||||| |||||    
T  22923118 tttaatcgaatttattcaatacacaattttattcgaattcacgctgggttta 22923067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 111
Target Start/End: Complemental strand, 11788468 - 11788436
Alignment:
Q  79 tttattcgaatttattcaatacgcaactttatt 111  Q
    ||||||| |||||||||||||||||||||||||    
T  11788468 tttattcaaatttattcaatacgcaactttatt 11788436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 33371583 - 33371701
Alignment:
Q  12 atgaaggaatttgatgtgataatatatatagttgatatacatgttgtttatgtaaagtaatgtaacttttattcgaatttattcaatacgcaactttatt 111  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||||||| |||||||||||||||||||||||||    
T  33371583 atgaaggaatttgatgtgataacatatatagttgatatacatgttgtttatgtaaagtaagataatttttattcaaatttattcaatacgcaactttatt 33371682  T
Q  112 tgaattcacgctgagttta 130  Q
    |||||||||||||||||||    
T  33371683 tgaattcacgctgagttta 33371701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 10398483 - 10398600
Alignment:
Q  13 tgaaggaatttgatgtgataatatatatagttgatatacatgttgtttatgtaaagtaatgtaacttttattcgaatttattcaatacgcaactttattt 112  Q
    |||| |||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||     
T  10398483 tgaatgaatttgatgtgataacatatatagttgatgtacatgttgtttatgtaatgtaatgtaacttttattcgaatttattcaatacacaactttattc 10398582  T
Q  113 gaattcacgctgagttta 130  Q
    ||||||||| ||| ||||    
T  10398583 gaattcacgttgacttta 10398600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 33371752 - 33371816
Alignment:
Q  166 cttggtacttggtaatttttccatgttttccatatggactccatgtagttaaatcgcttagcctt 230  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  33371752 cttggcacttggtaatttttccatgttttccatatggactacatgtagctaaatcgcttagcctt 33371816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 18921495 - 18921551
Alignment:
Q  61 atgtaaagtaatgtaacttttattcgaatttattcaatacgcaactttatttgaatt 117  Q
    |||||| ||||||||||||||||||||||||||| |||| ||||||||||| |||||    
T  18921495 atgtaatgtaatgtaacttttattcgaatttatttaatatgcaactttattcgaatt 18921551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 130
Target Start/End: Complemental strand, 36311152 - 36311106
Alignment:
Q  84 tcgaatttattcaatacgcaactttatttgaattcacgctgagttta 130  Q
    ||||||||||||||||||||||||||||  |||||||| || |||||    
T  36311152 tcgaatttattcaatacgcaactttattcaaattcacgttgggttta 36311106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 6754909 - 6755024
Alignment:
Q  12 atgaaggaatttgatgtgataatatatatagttgatatacatgttgtttatgtaaagtaatgtaacttttattcgaatttattcaatacgcaactttatt 111  Q
    |||||||||||||||||||||| ||||||||||||||||||||||   ||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  6754909 atgaaggaatttgatgtgataacatatatagttgatatacatgtt---tatgtattgtaatgtaacttttattcgaatttattcaatacgcaactttatt 6755005  T
Q  112 tgaattcacgctgagttta 130  Q
     ||||||| ||||||||||    
T  6755006 cgaattcatgctgagttta 6755024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 6463860 - 6463750
Alignment:
Q  12 atgaaggaatttgatgtgataatatatatagttgatatacatgttgtttatgtaaagtaatgtaac-ttttattcgaatttattcaatacgcaactttat 110  Q
    |||||||||||||||||||||| ||||||||||||||||||   ||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||    
T  6463860 atgaaggaatttgatgtgataacatatatagttgatataca---tgtttatgtaatgtaatgtaactttttattcgaatttatacaatacgcaactttat 6463764  T
Q  111 ttgaattcacgctg 124  Q
    | ||||||||||||    
T  6463763 tcgaattcacgctg 6463750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 130
Target Start/End: Complemental strand, 8629583 - 8629488
Alignment:
Q  35 atatatagttgatatacatgttgtttatgtaaagtaatgtaacttttattcgaatttattcaatacgcaactttatttgaattcacgctgagttta 130  Q
    |||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||  ||||||||| ||||||||||| ||||||    
T  8629583 atatatagttgacatacatgtcgtttatgtaatgtaatgtaacttttattcgaatttattcaatacataactttattcgaattcacgctaagttta 8629488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 7955245 - 7955320
Alignment:
Q  12 atgaaggaatttgatgtgataatatatatagttgatatacatgttgtttatgtaaagtaatgtaacttttattcga 87  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||| ||||||||||||||    
T  7955245 atgaaggaatttgatgtgataacatatatagttggtatacatgttgtttatgtaaaataatataacttttattcga 7955320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 15637556 - 15637612
Alignment:
Q  61 atgtaaagtaatgtaacttttattcgaatttattcaatacgcaactttatttgaatt 117  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15637556 atgtaatgtaatgtaacttttattcgaatttattcaatacacaactttatttgaatt 15637612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 111
Target Start/End: Original strand, 7955339 - 7955376
Alignment:
Q  74 taacttttattcgaatttattcaatacgcaactttatt 111  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7955339 taacttttattcgaatttattcaatacgcaactttatt 7955376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 15637661 - 15637713
Alignment:
Q  79 tttattcgaatttattcaatacgcaa-ctttatttgaattcacgctgagttta 130  Q
    ||||||||||||||||||||||||||  |||||| |||||||| |||||||||    
T  15637661 tttattcgaatttattcaatacgcaatttttattcgaattcacactgagttta 15637713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 1637972 - 1637921
Alignment:
Q  79 tttattcgaatttattcaatacgcaactttatttgaattcacgctgagttta 130  Q
    |||||| ||||||||||||||| |||||||  | ||||||||||||||||||    
T  1637972 tttattagaatttattcaatacacaactttgatcgaattcacgctgagttta 1637921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 20375390 - 20375355
Alignment:
Q  12 atgaaggaatttgatgtgataatatatatagttgat 47  Q
    |||| |||||||||||||||||||||||||||||||    
T  20375390 atgagggaatttgatgtgataatatatatagttgat 20375355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 33448803 - 33448741
Alignment:
Q  61 atgtaaagtaatgtaacttttattcgaatttattcaatacgcaa-ctttatttgaattcacgc 122  Q
    |||||| ||||||||||||||||| ||||||||||| ||| |||  |||||| ||||||||||    
T  33448803 atgtaatgtaatgtaacttttattagaatttattcagtacacaatttttattcgaattcacgc 33448741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 6463725 - 6463673
Alignment:
Q  79 tttattcgaatttattcaatacgcaacttt-atttgaattcacgctgagttta 130  Q
    ||||||||||||||||||||| |||| ||| ||| ||||||||||||| ||||    
T  6463725 tttattcgaatttattcaataagcaattttcattcgaattcacgctgaattta 6463673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 16708572 - 16708689
Alignment:
Q  12 atgaaggaatttgatgtgataatatatatagttgatatacatgttgtttatgtaaagtaatgtaacttttattcgaatttattcaatacgcaactttatt 111  Q
    ||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||| ||||||||||    
T  16708572 atgaatgaatttgatgagataacatatatagttgatatacatgttgtttatgtaatgtaatgtaatttttattcg-atttattcaatacacaactttatt 16708670  T
Q  112 tgaattcacgctgagttta 130  Q
     ||||||||||||||||||    
T  16708671 cgaattcacgctgagttta 16708689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 20148863 - 20148952
Alignment:
Q  15 aaggaatttgatgtgataatatatatagttgatatacatgttgtttatgtaaagtaatgtaacttttattcgaatttattcaatacgcaa 104  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  20148863 aaggaatttgatgtgataacatatatagttgatatacatgttgtttatgtaatgtaatgtaacttttattcgaatttattcaatacgcaa 20148952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 33 - 130
Target Start/End: Original strand, 6902562 - 6902659
Alignment:
Q  33 atatatatagttgatatacatgttgtttatgtaaagtaatgtaacttttattcgaatttattcaatacgcaactttatttgaattcacgctgagttta 130  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| | ||||||||| ||||| ||||||||||||    
T  6902562 atatttatagttgatatacatgttgtttacgtaaagtaatgtaacttttattcaaatttattccataagtaactttattcgaatttacgctgagttta 6902659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 16708122 - 16708190
Alignment:
Q  12 atgaaggaatttgatgtgataatatatatagttgatatacatgttgtttatgtaaagtaatgtaacttt 80  Q
    ||||| |||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||    
T  16708122 atgaatgaatttgatgtgataacatatatcgttgatatacatgttgtttatgtaatgtaatgtaacttt 16708190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 26616927 - 26616886
Alignment:
Q  83 ttcgaatttattcaatacgcaactttatttgaattcacgctg 124  Q
    |||||||||||||||||||||| |||||| ||||||||||||    
T  26616927 ttcgaatttattcaatacgcaattttattcgaattcacgctg 26616886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 15891224 - 15891173
Alignment:
Q  58 tttatgtaaagtaatgtaacttttattcgaatttattcaatacgcaacttta 109  Q
    ||||||||| ||||||| ||||||| ||||| ||||||||||||| ||||||    
T  15891224 tttatgtaatgtaatgttacttttaatcgaaattattcaatacgcgacttta 15891173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 117
Target Start/End: Complemental strand, 28745880 - 28745842
Alignment:
Q  79 tttattcgaatttattcaatacgcaactttatttgaatt 117  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  28745880 tttattcaaatttattcaatacgcaactttatttaaatt 28745842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 12764383 - 12764415
Alignment:
Q  79 tttattcgaatttattcaatacgcaactttatt 111  Q
    |||||||||||||||||||||| ||||||||||    
T  12764383 tttattcgaatttattcaatacacaactttatt 12764415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 111
Target Start/End: Complemental strand, 28272840 - 28272808
Alignment:
Q  79 tttattcgaatttattcaatacgcaactttatt 111  Q
    ||||||||||||||||| |||||||||||||||    
T  28272840 tttattcgaatttattccatacgcaactttatt 28272808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 31171428 - 31171376
Alignment:
Q  58 tttatgtaaa-gtaatgtaacttttattcgaatttattcaatacgcaacttta 109  Q
    |||||||||| ||||||||||||||||||||||||||| |||| |||||||||    
T  31171428 tttatgtaaatgtaatgtaacttttattcgaatttatttaatatgcaacttta 31171376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 111
Target Start/End: Original strand, 26140993 - 26141026
Alignment:
Q  78 ttttattcgaatttattcaatacgcaactttatt 111  Q
    ||||||||||||||||||||||||||||||||||    
T  26140993 ttttattcgaatttattcaatacgcaactttatt 26141026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 12504230 - 12504179
Alignment:
Q  79 tttattcgaatttattcaatacgcaactttatttgaattcacgctgagttta 130  Q
    |||||||||||||||||||||| |||||||||| ||||| | |||| |||||    
T  12504230 tttattcgaatttattcaatacacaactttattcgaattaaagctgggttta 12504179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 10205420 - 10205452
Alignment:
Q  79 tttattcgaatttattcaatacgcaactttatt 111  Q
    ||||||| |||||||||||||||||||||||||    
T  10205420 tttattcaaatttattcaatacgcaactttatt 10205452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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