View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_high_112 (Length: 241)
Name: NF4445_high_112
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_high_112 |
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Alignment Details
Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 91 - 224
Target Start/End: Complemental strand, 52563457 - 52563324
Alignment:
| Q |
91 |
aagtgagtataatgaaaaacaagtgtttgagtcgttattttcaaaattgattttggcatccaaaagcgaagcgatcccagccaaagctggtatttcaaac |
190 |
Q |
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| T |
52563457 |
aagtgagtataatgaaaaacaagtgtttgggtcgttattttcgaaattgattttggcatccaaaagcgaagcgatcccaaccgaagttggtatttcaaac |
52563358 |
T |
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| Q |
191 |
ataaaacaatctactaacatgaaatgacgagaat |
224 |
Q |
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| T |
52563357 |
ataaaacaatctactaacataaaatgacgagaat |
52563324 |
T |
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Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 52563582 - 52563494
Alignment:
| Q |
1 |
tacaaattgattttataagtatgaattagacaataaaattctacattacataatgtgtgacttgacaataagtactcgtttggttggac |
89 |
Q |
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| T |
52563582 |
tacaaatcgattttataagtatgaattagacaataaaattctacattacataatgtgtgacttgacaataagtactcgtttggttggac |
52563494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 159
Target Start/End: Complemental strand, 20198436 - 20198372
Alignment:
| Q |
94 |
tgagtataatgaaaaacaagtgtttgagtcgttattttcaaaattgattttggcatccaaaagcga |
159 |
Q |
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| T |
20198436 |
tgagtctaatgaaaaacaagtgtttggatcattattttcaaaattgattttggcat-caaaagcga |
20198372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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