View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4445_high_115 (Length: 240)

Name: NF4445_high_115
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4445_high_115
NF4445_high_115
[»] chr3 (3 HSPs)
chr3 (1-224)||(51733799-51734023)
chr3 (19-100)||(48735499-48735581)
chr3 (20-103)||(46288450-46288534)
[»] chr4 (1 HSPs)
chr4 (26-100)||(37483135-37483210)
[»] chr6 (1 HSPs)
chr6 (19-100)||(24971087-24971169)
[»] chr8 (4 HSPs)
chr8 (19-100)||(35640701-35640783)
chr8 (23-99)||(12973836-12973913)
chr8 (21-100)||(31680391-31680471)
chr8 (8-87)||(39388345-39388425)
[»] chr7 (1 HSPs)
chr7 (173-201)||(42111206-42111234)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 51733799 - 51734023
Alignment:
Q  1 ttgaattagtatcaatgtacttggggaacactcccataaaatctagctatcaaagggaagaaccaagtcatttaaatactccatcaaacatcccatacta 100  Q
    |||||| |||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51733799 ttgaataagtatctaagtacttggggaatactcccataaaatctagctatcaaagggaagaaccaagtcatttaaatactccatcaaacatcccatacta 51733898  T
Q  101 atcaacgtgtacttgggca-cccataatatccaagtctttatcatagcaccgcagctgagagctgacatctgccactctacgacactttactcagtcttt 199  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  51733899 atcaacgtgtacttgggcaccccataatatccaagtctttatcatagcaccgcagctgagagctgacatctggcactctacgacactttactcagtcttt 51733998  T
Q  200 ccaagcaaagcaacgacttgtctct 224  Q
    |||||||||||||||||||||||||    
T  51733999 ccaagcaaagcaacgacttgtctct 51734023  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 48735499 - 48735581
Alignment:
Q  19 acttggggaacactcccataaaatctagctatcaa-agggaagaaccaagtcatttaaatactccatcaaacatcccatacta 100  Q
    ||||||||||| || || ||||| ||| ||||||| ||||||||||| || || |||||||||||||| ||||| ||||||||    
T  48735499 acttggggaaccctgccttaaaagctacctatcaagagggaagaaccgagccacttaaatactccatcgaacatgccatacta 48735581  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 46288534 - 46288450
Alignment:
Q  20 cttggggaacactcccataaaatctagctatcaaagggaa-gaaccaagtcatttaaatactccatcaaacatcccatactaatc 103  Q
    ||||||||||  |||| ||||| |||||||| || || || |||||||| || |||||||||||| | | |||||||||||||||    
T  46288534 cttggggaaccttcccttaaaagctagctattaagggaaaagaaccaagccacttaaatactccaccgagcatcccatactaatc 46288450  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 37483210 - 37483135
Alignment:
Q  26 gaacactcccataaaatctagctatcaaagg-gaagaaccaagtcatttaaatactccatcaaacatcccatacta 100  Q
    |||| ||||| ||||| |||| |||||| || ||||||||||| || |||||||||||| ||||||||||||||||    
T  37483210 gaaccctcccttaaaaactagttatcaagggagaagaaccaagccacttaaatactccaccaaacatcccatacta 37483135  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 24971087 - 24971169
Alignment:
Q  19 acttggggaacactcccataaaatctagctatcaaaggga-agaaccaagtcatttaaatactccatcaaacatcccatacta 100  Q
    ||||||||||| |||||  |||| ||||||||||| |||| ||||||||  || |||||||||||| ||| ||||||||||||    
T  24971087 acttggggaaccctccctgaaaagctagctatcaaggggagagaaccaaaccacttaaatactccaccaagcatcccatacta 24971169  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 35640701 - 35640783
Alignment:
Q  19 acttggggaacactcccataaaatctagctatcaaag-ggaagaaccaagtcatttaaatactccatcaaacatcccatacta 100  Q
    ||||||||| | ||||| ||||| |||||||| || | |||||||||||| || |||| ||||||| ||| ||||||||||||    
T  35640701 acttggggagccctcccttaaaagctagctattaaggtggaagaaccaagccacttaagtactccaccaagcatcccatacta 35640783  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 12973836 - 12973913
Alignment:
Q  23 ggggaacactcccataaaatctagctatcaaagggaa-gaaccaagtcatttaaatactccatcaaacatcccatact 99  Q
    ||||||| || || |||||  |||||||||||||||| ||||||||||| ||||||| | || ||| |||||||||||    
T  12973836 ggggaactcttccttaaaagttagctatcaaagggaaagaaccaagtcacttaaatatttcaccaagcatcccatact 12973913  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 31680471 - 31680391
Alignment:
Q  21 ttggggaacactcccataaaatctagctatcaa-agggaagaaccaagtcatttaaatactccatcaaacatcccatacta 100  Q
    ||||||||| ||||| ||||| ||||||||||| ||||||||||||||  | ||||||| ||||   ||||||| ||||||    
T  31680471 ttggggaaccctcccttaaaagctagctatcaagagggaagaaccaagctacttaaataatccactgaacatcctatacta 31680391  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 39388425 - 39388345
Alignment:
Q  8 agtatcaatgtacttggggaacactcccataaaatctagctatcaa-agggaagaaccaagtcatttaaatactccatcaa 87  Q
    |||||||| | ||||||| ||| ||| | ||||| ||||||||||| |||||||||||||  || |||||||||| |||||    
T  39388425 agtatcaaagcacttgggaaaccctctcttaaaagctagctatcaagagggaagaaccaatccacttaaatactcaatcaa 39388345  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 201
Target Start/End: Complemental strand, 42111234 - 42111206
Alignment:
Q  173 cactctacgacactttactcagtctttcc 201  Q
    |||||||||||||||||||||||||||||    
T  42111234 cactctacgacactttactcagtctttcc 42111206  T

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