View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_high_130 (Length: 230)
Name: NF4445_high_130
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_high_130 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 36985228 - 36985014
Alignment:
| Q |
1 |
aaaggaacagtagagggggacagggctggtggagaggttcctcggagttcttctacgcagatggatttgcagaaagaccggacttgtgatttatgtttga |
100 |
Q |
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| T |
36985228 |
aaaggaacagtagagggggacagggctggtggagaggttcctcagagttcttctatgcagatggatttgcagaaagaccggacttgtgatttatgtttga |
36985129 |
T |
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| Q |
101 |
taacagcagaggaaatcttgaatgcccacttcagtggaaggaaacacagtgctgctctgcagaagcaaaaggatgcagaagcgataaatgaaatcacaac |
200 |
Q |
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| T |
36985128 |
caacagcagaggaaatcttgaatgcccgcttcagtggaaggaaacacagtgctgctctgcagaagcaaaaggatgcagaagcgataaatgaaatcacaac |
36985029 |
T |
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| Q |
201 |
tactgataataaaga |
215 |
Q |
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| T |
36985028 |
tactgataataaaga |
36985014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 36986363 - 36986159
Alignment:
| Q |
20 |
acagggctggtggagaggttcctcggagttct---tctacgcagatggatttgcagaaagaccggacttgtgatttatgtttgataacagca------ga |
110 |
Q |
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| T |
36986363 |
acagcgctggtggagaggttcctcagagttctacttctacacagaaggaagtgcagaaagagtggacttgtgctttatgtttggtaacaacaacgagtga |
36986264 |
T |
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| Q |
111 |
ggaaatcttgaatgcccacttcagtggaaggaaacacagtgctgctctgcagaagcaaaaggatgcagaagcgataaatgaaatcacaactactgataat |
210 |
Q |
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| T |
36986263 |
gaaaatcttgaattcccacctgagtggaaagaaacacagagctgctcttcagaggcaaaaggatgcagaggtgaaaaatgaaatcatagctactgaaaat |
36986164 |
T |
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| Q |
211 |
aaaga |
215 |
Q |
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||||| |
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| T |
36986163 |
aaaga |
36986159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 36996369 - 36996311
Alignment:
| Q |
157 |
ctgcagaagcaaaaggatgcagaagcgataaatgaaatcacaactactgataataaaga |
215 |
Q |
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| T |
36996369 |
ctgcagaagcaaaaggatgcagaagggacaaatgaaatcatggctactgataataaaga |
36996311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 36980689 - 36980639
Alignment:
| Q |
1 |
aaaggaacagtagagggggacagggctggtggagaggttcctcggagttct |
51 |
Q |
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|||||||||| |||| | || |||||||||||||| ||||||||||||||| |
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| T |
36980689 |
aaaggaacagcagagagtgaaagggctggtggagaagttcctcggagttct |
36980639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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