View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4445_high_136 (Length: 220)
Name: NF4445_high_136
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_high_136 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 44851205 - 44851374
Alignment:
| Q |
1 |
tgcttcattgctcatcatcacctatacttcaacacataaccatccagatcccactgccctctcctccaccacaaatttagctcaacaaccaaaagaatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44851205 |
tgcttcattgctcatcatcacctatacttcaacacataaccatccagatcccactgccctctcctccaccacaaatttagctcaacaaccaaaagaatcc |
44851304 |
T |
|
| Q |
101 |
aaaaccgaaacaaccaaagatctcccagttacttctaaggaagaaaaccaagaacagaaacaggtagaag |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44851305 |
aaaaccgaaacaaccaaagatctcccagttacttctaaggaagaaaaccaagaacaaaaacaggtagaag |
44851374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University