View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_high_142 (Length: 204)
Name: NF4445_high_142
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_high_142 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 5090556 - 5090388
Alignment:
| Q |
17 |
atgaatacgagtttattcggatgatagtcacatatgtctccaacatgatcaatcacactcctttacatgttgctgattacccggttggattagagcctcg |
116 |
Q |
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| T |
5090556 |
atgaatacgagtttattcagatgatagtcacatatgtctccaacaagatcaatcacactcctttacatgttgctgattacccggttggattagagcctcg |
5090457 |
T |
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| Q |
117 |
tgttctgaaattatattcactactggatattggttctaatgataaagtccaaatgctagggatctatgg |
185 |
Q |
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| T |
5090456 |
tgttctgaaattatattcactactggatattggttctaatgataaagtccaaatgctagggatctatgg |
5090388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 28185972 - 28186140
Alignment:
| Q |
17 |
atgaatacgagtttattcggatgatagtcacatatgtctccaacatgatcaatcacactcctttacatgttgctgattacccggttggattagagcctcg |
116 |
Q |
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| T |
28185972 |
atgaacacgagtttattgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttatatgttgctgatttccctgttggtatcgagtctag |
28186071 |
T |
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| Q |
117 |
tgttctgaaattatattcactactggatattggttctaatgataaagtccaaatgctagggatctatgg |
185 |
Q |
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| T |
28186072 |
ggttctaaaagtaaattcacttatggattttggatctaatggtgaagttcagatgctagggatctatgg |
28186140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 28140170 - 28140213
Alignment:
| Q |
73 |
actcctttacatgttgctgattacccggttggattagagcctcg |
116 |
Q |
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| T |
28140170 |
actcctttacatgttgcggattacccggttggaatagagtctcg |
28140213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 17643559 - 17643600
Alignment:
| Q |
63 |
gatcaatcacactcctttacatgttgctgattacccggttgg |
104 |
Q |
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| T |
17643559 |
gatcaatcgcactcctttacatgttgctgataacccagttgg |
17643600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 17617907 - 17617947
Alignment:
| Q |
63 |
gatcaatcacactcctttacatgttgctgattacccggttg |
103 |
Q |
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| T |
17617907 |
gatcaatcgcactcctttacatgttgctgataacccagttg |
17617947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 17699718 - 17699758
Alignment:
| Q |
63 |
gatcaatcacactcctttacatgttgctgattacccggttg |
103 |
Q |
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|||||||| |||||||||||||||||||||| |||| |||| |
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| T |
17699718 |
gatcaatcgcactcctttacatgttgctgataacccagttg |
17699758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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