View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4445_high_19 (Length: 513)

Name: NF4445_high_19
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4445_high_19
NF4445_high_19
[»] chr2 (27 HSPs)
chr2 (25-495)||(40362465-40362930)
chr2 (33-186)||(9933600-9933754)
chr2 (92-211)||(2818711-2818831)
chr2 (36-211)||(3116865-3117041)
chr2 (78-211)||(24101838-24101972)
chr2 (78-186)||(9281378-9281487)
chr2 (92-211)||(45408670-45408790)
chr2 (92-189)||(42713805-42713904)
chr2 (46-211)||(34490455-34490621)
chr2 (72-211)||(1923986-1924127)
chr2 (72-211)||(22269747-22269887)
chr2 (78-172)||(12850587-12850682)
chr2 (78-208)||(16705764-16705895)
chr2 (92-186)||(27920617-27920712)
chr2 (78-208)||(34455916-34456047)
chr2 (111-189)||(43476010-43476089)
chr2 (77-186)||(9850789-9850898)
chr2 (92-211)||(7737109-7737230)
chr2 (92-169)||(6605780-6605858)
chr2 (78-186)||(23835907-23836017)
chr2 (47-210)||(7116370-7116534)
chr2 (78-175)||(29229405-29229504)
chr2 (78-175)||(29342705-29342804)
chr2 (51-175)||(39243025-39243150)
chr2 (149-211)||(10552984-10553046)
chr2 (78-142)||(20892915-20892980)
chr2 (144-187)||(17434727-17434770)
[»] scaffold0086 (1 HSPs)
scaffold0086 (45-211)||(48124-48291)
[»] chr1 (41 HSPs)
chr1 (92-211)||(19954917-19955037)
chr1 (72-211)||(14387021-14387161)
chr1 (92-211)||(27240930-27241050)
chr1 (78-208)||(5189500-5189631)
chr1 (42-186)||(2125101-2125246)
chr1 (78-211)||(2854538-2854672)
chr1 (77-186)||(6079414-6079524)
chr1 (78-211)||(23698508-23698642)
chr1 (78-211)||(48954220-48954354)
chr1 (78-211)||(50627162-50627296)
chr1 (45-176)||(3607770-3607902)
chr1 (46-160)||(9895252-9895367)
chr1 (44-204)||(15324623-15324785)
chr1 (72-211)||(47940576-47940717)
chr1 (78-208)||(9978060-9978192)
chr1 (92-186)||(42561326-42561421)
chr1 (78-211)||(27926257-27926392)
chr1 (72-211)||(27928304-27928444)
chr1 (111-189)||(957653-957732)
chr1 (78-208)||(1387809-1387940)
chr1 (111-211)||(49284300-49284401)
chr1 (72-174)||(4299435-4299541)
chr1 (78-211)||(51789603-51789735)
chr1 (78-211)||(19796987-19797121)
chr1 (111-211)||(50162544-50162645)
chr1 (64-175)||(48645056-48645167)
chr1 (92-186)||(27670188-27670283)
chr1 (117-211)||(40647188-40647283)
chr1 (94-186)||(26208471-26208565)
chr1 (77-173)||(29598353-29598450)
chr1 (120-211)||(36880584-36880676)
chr1 (77-189)||(21930410-21930521)
chr1 (92-220)||(28244003-28244126)
chr1 (92-176)||(22339025-22339110)
chr1 (78-186)||(51276726-51276835)
chr1 (77-137)||(16755255-16755315)
chr1 (111-164)||(16518353-16518407)
chr1 (92-176)||(2302448-2302533)
chr1 (111-175)||(50856363-50856428)
chr1 (118-176)||(36007861-36007920)
chr1 (72-172)||(28431747-28431850)
[»] scaffold0122 (1 HSPs)
scaffold0122 (92-211)||(45879-45999)
[»] chr8 (19 HSPs)
chr8 (72-211)||(40891038-40891178)
chr8 (78-211)||(38629505-38629639)
chr8 (47-211)||(24741829-24741994)
chr8 (44-211)||(38520015-38520183)
chr8 (78-208)||(37114269-37114400)
chr8 (43-211)||(12234462-12234632)
chr8 (92-211)||(15882245-15882366)
chr8 (78-208)||(29780968-29781099)
chr8 (46-211)||(17426634-17426802)
chr8 (92-211)||(8210368-8210488)
chr8 (43-189)||(38405134-38405282)
chr8 (92-186)||(4262007-4262102)
chr8 (78-175)||(23940846-23940945)
chr8 (89-211)||(14834678-14834798)
chr8 (92-176)||(40393768-40393852)
chr8 (116-189)||(11828624-11828698)
chr8 (78-211)||(24211284-24211418)
chr8 (78-211)||(33100651-33100785)
chr8 (92-220)||(35467216-35467344)
[»] chr7 (28 HSPs)
chr7 (92-211)||(30259072-30259192)
chr7 (78-209)||(30594724-30594856)
chr7 (78-211)||(24836051-24836185)
chr7 (78-211)||(34052310-34052444)
chr7 (111-205)||(12142257-12142352)
chr7 (51-211)||(3953048-3953209)
chr7 (42-176)||(9285755-9285890)
chr7 (42-176)||(9289822-9289957)
chr7 (44-186)||(37093765-37093908)
chr7 (78-211)||(39617847-39617982)
chr7 (78-211)||(35339284-35339418)
chr7 (78-211)||(38883252-38883386)
chr7 (92-211)||(20184244-20184365)
chr7 (78-211)||(31231620-31231756)
chr7 (92-176)||(45997549-45997634)
chr7 (78-176)||(10936511-10936610)
chr7 (78-175)||(40358146-40358244)
chr7 (51-217)||(29277842-29278008)
chr7 (78-189)||(25742463-25742571)
chr7 (92-186)||(31521556-31521651)
chr7 (117-211)||(39143718-39143813)
chr7 (47-187)||(38989101-38989245)
chr7 (46-176)||(33749643-33749774)
chr7 (78-138)||(35665696-35665756)
chr7 (44-176)||(48103365-48103495)
chr7 (118-211)||(10398390-10398484)
chr7 (114-187)||(16876486-16876560)
chr7 (111-157)||(24123815-24123862)
[»] chr4 (27 HSPs)
chr4 (92-211)||(1298957-1299077)
chr4 (41-189)||(35360671-35360819)
chr4 (72-211)||(42274498-42274639)
chr4 (88-211)||(4552826-4552950)
chr4 (78-211)||(530675-530809)
chr4 (46-211)||(13204376-13204542)
chr4 (111-211)||(24915800-24915901)
chr4 (44-203)||(20435154-20435314)
chr4 (92-211)||(32318726-32318846)
chr4 (78-211)||(18417688-18417822)
chr4 (78-211)||(21048711-21048844)
chr4 (77-175)||(4895002-4895101)
chr4 (78-211)||(24969547-24969684)
chr4 (78-211)||(27434641-27434775)
chr4 (36-211)||(16995561-16995736)
chr4 (92-211)||(23928574-23928693)
chr4 (92-211)||(55107569-55107689)
chr4 (92-189)||(24294512-24294610)
chr4 (46-211)||(3422435-3422601)
chr4 (92-172)||(28809891-28809973)
chr4 (111-211)||(55049406-55049507)
chr4 (78-211)||(4688253-4688388)
chr4 (119-186)||(9355584-9355652)
chr4 (94-176)||(56552108-56552191)
chr4 (111-186)||(2272430-2272506)
chr4 (144-211)||(43486206-43486273)
chr4 (78-154)||(52824270-52824347)
[»] chr3 (49 HSPs)
chr3 (45-211)||(3970497-3970664)
chr3 (78-211)||(21969163-21969297)
chr3 (78-211)||(21991599-21991733)
chr3 (78-211)||(32237400-32237534)
chr3 (78-211)||(45487830-45487964)
chr3 (51-208)||(55340302-55340461)
chr3 (92-189)||(12838122-12838220)
chr3 (78-211)||(26906485-26906619)
chr3 (78-211)||(36278762-36278896)
chr3 (78-175)||(43150511-43150609)
chr3 (51-211)||(13078169-13078330)
chr3 (111-211)||(35368797-35368898)
chr3 (78-211)||(22101195-22101330)
chr3 (92-186)||(25488372-25488467)
chr3 (92-186)||(25561056-25561151)
chr3 (78-186)||(25446280-25446390)
chr3 (72-211)||(4072279-4072420)
chr3 (72-176)||(12789631-12789736)
chr3 (51-211)||(36822766-36822927)
chr3 (88-180)||(44611418-44611511)
chr3 (78-211)||(50099463-50099599)
chr3 (78-211)||(22176139-22176274)
chr3 (92-208)||(10254613-10254731)
chr3 (78-211)||(36657439-36657573)
chr3 (42-143)||(46664171-46664272)
chr3 (87-186)||(44920677-44920777)
chr3 (94-186)||(8831787-8831881)
chr3 (77-169)||(13724035-13724129)
chr3 (94-175)||(45712945-45713027)
chr3 (89-176)||(404086-404175)
chr3 (89-189)||(46222056-46222156)
chr3 (92-165)||(10017159-10017233)
chr3 (46-211)||(37506133-37506298)
chr3 (114-211)||(46679328-46679426)
chr3 (47-211)||(26976848-26977013)
chr3 (92-211)||(39850350-39850471)
chr3 (92-175)||(10441300-10441384)
chr3 (92-186)||(42105414-42105509)
chr3 (92-208)||(10117560-10117673)
chr3 (78-211)||(26977721-26977855)
chr3 (111-175)||(43639123-43639188)
chr3 (78-142)||(36329256-36329320)
chr3 (111-217)||(297537-297644)
chr3 (51-176)||(39677315-39677444)
chr3 (92-211)||(1476557-1476677)
chr3 (72-154)||(38125242-38125325)
chr3 (44-176)||(157009-157143)
chr3 (117-175)||(49984001-49984060)
chr3 (78-186)||(5529922-5530032)
[»] chr6 (18 HSPs)
chr6 (38-211)||(8091053-8091227)
chr6 (78-211)||(21379947-21380081)
chr6 (92-211)||(885430-885550)
chr6 (88-211)||(7808650-7808774)
chr6 (92-211)||(15546677-15546797)
chr6 (78-189)||(31764353-31764465)
chr6 (78-186)||(3369016-3369125)
chr6 (78-189)||(13439726-13439839)
chr6 (78-211)||(11687149-11687283)
chr6 (111-211)||(4238918-4239019)
chr6 (111-211)||(4890486-4890587)
chr6 (77-211)||(13172580-13172714)
chr6 (111-176)||(14393628-14393694)
chr6 (92-211)||(29609046-29609166)
chr6 (78-211)||(18998123-18998257)
chr6 (72-186)||(20501731-20501846)
chr6 (72-180)||(17279549-17279661)
chr6 (142-186)||(6433753-6433797)
[»] chr5 (29 HSPs)
chr5 (67-211)||(12744846-12744991)
chr5 (72-211)||(13754297-13754437)
chr5 (78-211)||(1138590-1138724)
chr5 (36-211)||(4265971-4266147)
chr5 (72-211)||(12807936-12808076)
chr5 (46-211)||(21259736-21259902)
chr5 (43-208)||(43539104-43539269)
chr5 (111-211)||(33629351-33629452)
chr5 (78-176)||(21261974-21262073)
chr5 (78-211)||(15855874-15856008)
chr5 (78-211)||(16472986-16473120)
chr5 (78-211)||(20476462-20476596)
chr5 (78-211)||(35420618-35420752)
chr5 (95-186)||(1456053-1456145)
chr5 (78-176)||(24397287-24397386)
chr5 (95-176)||(37552349-37552431)
chr5 (92-176)||(37655193-37655277)
chr5 (111-211)||(32623221-32623322)
chr5 (111-190)||(18236532-18236612)
chr5 (45-168)||(35806933-35807057)
chr5 (46-171)||(35276338-35276465)
chr5 (89-189)||(5144470-5144570)
chr5 (92-176)||(8364671-8364756)
chr5 (61-208)||(19976275-19976424)
chr5 (131-211)||(21591219-21591300)
chr5 (131-211)||(21595336-21595417)
chr5 (94-157)||(2538443-2538507)
chr5 (51-138)||(42522900-42522987)
chr5 (151-211)||(10132359-10132419)
[»] scaffold0653 (1 HSPs)
scaffold0653 (42-176)||(3434-3569)
[»] scaffold0013 (1 HSPs)
scaffold0013 (88-183)||(94211-94309)
[»] scaffold0107 (1 HSPs)
scaffold0107 (78-211)||(51094-51228)
[»] scaffold0188 (1 HSPs)
scaffold0188 (46-186)||(7085-7226)
[»] scaffold0137 (1 HSPs)
scaffold0137 (51-208)||(10120-10277)
[»] scaffold0118 (1 HSPs)
scaffold0118 (92-211)||(14487-14607)
[»] scaffold0006 (1 HSPs)
scaffold0006 (78-142)||(72347-72411)
[»] scaffold0163 (1 HSPs)
scaffold0163 (111-176)||(1980-2046)
[»] scaffold0595 (2 HSPs)
scaffold0595 (142-186)||(5801-5845)
scaffold0595 (78-126)||(5732-5780)
[»] scaffold0391 (1 HSPs)
scaffold0391 (49-144)||(3659-3755)
[»] scaffold0018 (1 HSPs)
scaffold0018 (111-175)||(138319-138384)


Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 25 - 495
Target Start/End: Original strand, 40362465 - 40362930
Alignment:
Q  25 aaaaagcgtgaattttaaaaaaggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataaca 124  Q
    ||||| ||||||||||| ||||||||||||||||| |||||||| |||||| |||||||||||||||||||    |||||||||||||||| ||||||||    
T  40362465 aaaaaacgtgaattttagaaaaggacaaaatttagttataatttgtgaggtgtttttcgtagagtttttaa----aaatacacatgttttgaatataaca 40362560  T
Q  125 aactatgagaaaattatgatttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaagttattttctttnnnn 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||| ||||        
T  40362561 aactatgagaaaattatgatttgagaaaatcatggtgaatttagttaagaaccatacgaaaaacatacacggagttgtacctaagttatttcctttaaaa 40362660  T
Q  225 nnntccannnnnnnnnaagatttgagaaaatattggagatcaactactcccttgaaaattttgttgcatgaccaaaaatgtctcttacattaattagttt 324  Q
       ||||         ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  40362661 aa-tccatttttttttaagatttgaaaaaatattggagatcaactactccctagaaaattttgttgcatgaccaaaa-tgtctcttacattaattagttt 40362758  T
Q  325 tagtttcatgtggttaacaacatgacaaataacacgtcacgttaaacatatcatgattcaacaacgtccaaaaagagcaaattgtgtaaaaacttgacaa 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40362759 tagtttcatgtggttaacaacatgacaaataacacgtcacgttaaacatatcatgattcaacaacgtccaaaaagagcaaattgtgtaaaaacttgacaa 40362858  T
Q  425 aagaactattatgtttaagtttatttttgtaaaagac-nnnnnnnntgttatcttcttcttgatgactaaac 495  Q
    |||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||    
T  40362859 aagaactattatgtttaagtttatttttgtaaaagacaaaaaaaaatgttatcttcttcttgatgactaaac 40362930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 33 - 186
Target Start/End: Complemental strand, 9933754 - 9933600
Alignment:
Q  33 tgaattttaaaaaaggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatga 132  Q
    |||| ||| |||||||| ||||||||| || ||||| | ||||  ||||||||  ||| ||||||||||||||| || |||| ||||||| ||||| |||    
T  9933754 tgaaattttaaaaaggagaaaatttaggtacaatttcttaggtgcttttcgtatggttcttaactaaaaatacatattttttagatataataaactttga 9933655  T
Q  133 gaaaattat-gatttgagaaaatcatggtgaatttagttaagaactatatgaaaa 186  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||    
T  9933654 gaaaattatggatttgagaaaatcatggtgaatttagttaagaaccataggaaaa 9933600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 2818711 - 2818831
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaacat 190  Q
    ||||||||||||||| || ||||||||||| |||||| ||||||||||||| ||||||| |||||||||||||||||||||||||| ||| ||||||||     
T  2818711 ttaactaaaaatacatattttttggatatatcaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaaccatacgaaaaacac 2818810  T
Q  191 acaaggagttgtacctaagtt 211  Q
      || || |||||||||||||    
T  2818811 ctaaagaattgtacctaagtt 2818831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 36 - 211
Target Start/End: Original strand, 3116865 - 3117041
Alignment:
Q  36 attttaaaaaaggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaa 135  Q
    ||||||||| |||| |||| |||| || |||| ||  |||  ||||||||  ||| ||||||||||||||| || |||||||||||||||||| ||||||    
T  3116865 attttaaaataggagaaaacttaggtacaattcttttggtgcttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttgagaa 3116964  T
Q  136 aattat-gatttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    |||||| ||||||||||||||||  ||||||||||||||||| ||| ||||| ||   | ||| |||||||||||||    
T  3116965 aattatggatttgagaaaatcataatgaatttagttaagaaccatacgaaaagcagctatggaattgtacctaagtt 3117041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 24101972 - 24101838
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||||| || |||||||||||||||||| |||||||||||| |||||||| ||||||||||  ||||||||||||||    
T  24101972 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgaggaaatcatggtatatttagttaagaac 24101873  T
Q  177 tatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     ||| ||||| ||   ||||| |||||||||||||    
T  24101872 catacgaaaagcacctaaggaattgtacctaagtt 24101838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 78 - 186
Target Start/End: Complemental strand, 9281487 - 9281378
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||| | || |||||||||||||||||| ||||||||||||| ||||||| ||||||| ||||||||||||||||||    
T  9281487 ttttcgtatggttcttaactaaaaatatatattttttggatataacaaactttgagaaaattatgaatttgaggaaatcatagtgaatttagttaagaac 9281388  T
Q  177 tatatgaaaa 186  Q
     |||||||||    
T  9281387 catatgaaaa 9281378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 45408670 - 45408790
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaactatatgaaaaacat 190  Q
    ||||||||||||||| || |||||||||||||||||| |||||||||||| |||||||| |||||||||| |||||| |||||||| ||| ||||| ||     
T  45408670 ttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgaggaaatcatggtaaatttaattaagaaccatacgaaaagcac 45408769  T
Q  191 acaaggagttgtacctaagtt 211  Q
      ||||| |||||||||||||    
T  45408770 ctaaggaattgtacctaagtt 45408790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 92 - 189
Target Start/End: Complemental strand, 42713904 - 42713805
Alignment:
Q  92 ttaactaaaaatacacatgtttt-ggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaaca 189  Q
    ||||||||||||||| || |||| |||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||    
T  42713904 ttaactaaaaatacatatttttttggatataataaactttgagaaaattatggatttgagaaaatcatggtgaatttagttaagaaccatacgaaaaaca 42713805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 46 - 211
Target Start/End: Original strand, 34490455 - 34490621
Alignment:
Q  46 aggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gat 144  Q
    |||| |||| |||| || |||| || |||| |||||||||  ||| ||||||||||||||| || |||||||||||||||||| |||||||||||| |||    
T  34490455 aggagaaaacttaggtacaattctttaggtgtttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggat 34490554  T
Q  145 ttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     |||| ||||||||||   ||||||||||||| ||| ||||| ||   ||||| |||||||||||||    
T  34490555 ctgaggaaatcatggtatttttagttaagaaccatacgaaaagcacctaaggaattgtacctaagtt 34490621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 72 - 211
Target Start/End: Complemental strand, 1924127 - 1923986
Alignment:
Q  72 aggtatttttcgtagagtttttaactaaaaatacacatgtttt-ggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagt 169  Q
    |||| |||||||||  ||| ||||||||||||||| || |||| |||||||||||||| ||||||||||||| ||| ||| |||||||||||||||||||    
T  1924127 aggtgtttttcgtatggttcttaactaaaaatacatatttttttggatataacaaactttgagaaaattatggattcgaggaaatcatggtgaatttagt 1924028  T
Q  170 taagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    ||||||| ||| ||||| ||   ||| | |||||||||||||    
T  1924027 taagaaccatacgaaaagcacctaagaaattgtacctaagtt 1923986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 72 - 211
Target Start/End: Original strand, 22269747 - 22269887
Alignment:
Q  72 aggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagtt 170  Q
    |||| |||||||||   |||||||||||||||||| || |||||||||||||||||| |||||||||||| |||||||| |||||||| |   |||||||    
T  22269747 aggtgtttttcgtatgatttttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgaggaaatcatgttttttttagtt 22269846  T
Q  171 aagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    |||||| ||| ||||| |||  ||||| |||||| ||||||    
T  22269847 aagaaccatacgaaaagcatctaaggaattgtacgtaagtt 22269887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 78 - 172
Target Start/End: Complemental strand, 12850682 - 12850587
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaa 172  Q
    ||||||||  ||| ||||||||||||||| || |||||||||||||||||| |||||||||||| |||||||| |||||||||| |||||||||||    
T  12850682 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgaggaaatcatggtaaatttagttaa 12850587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 78 - 208
Target Start/End: Original strand, 16705764 - 16705895
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||||| || |||||||||||||||||| ||| |||||||| | |||||||||||||| |||||||||||||| |||    
T  16705764 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttgataaaattatggctttgagaaaatcatagtgaatttagttaaaaac 16705863  T
Q  177 tatatgaaaaacatacaaggagttgtacctaa 208  Q
     ||| ||||| ||   ||||| ||||||||||    
T  16705864 catacgaaaagcacctaaggaattgtacctaa 16705895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 92 - 186
Target Start/End: Original strand, 27920617 - 27920712
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaa 186  Q
    |||||||||| |||| || |||||||||||||||||| ||| ||||||||| ||||||| |||||||||||||||||||||||||| ||| |||||    
T  27920617 ttaactaaaactacatattttttggatataacaaactttgaaaaaattatggatttgaggaaatcatggtgaatttagttaagaaccatacgaaaa 27920712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 78 - 208
Target Start/End: Original strand, 34455916 - 34456047
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| |||| |||||||||| || |||||||||||||||||| |||||||||||| |||||||| |||| ||| |||||||| ||| ||||    
T  34455916 ttttcgtatggttcttaattaaaaatacatattttttggatataacaaactttgagaaaattatagatttgaggaaattatgatgaatttaattaggaac 34456015  T
Q  177 tatatgaaaaacatacaaggagttgtacctaa 208  Q
     ||| |||||||| | ||| | ||||||||||    
T  34456016 catacgaaaaacacataagaaattgtacctaa 34456047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 43476010 - 43476089
Alignment:
Q  111 ttttggatataacaaactatgagaaaattatga-tttgagaaaatcatggtgaatttagttaagaactatatgaaaaaca 189  Q
    |||||||||||| ||||| |||||||||||||| |||||| |||||||||||||||||||||||||| ||| ||||||||    
T  43476010 ttttggatataataaactttgagaaaattatgaatttgaggaaatcatggtgaatttagttaagaaccatacgaaaaaca 43476089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 77 - 186
Target Start/End: Complemental strand, 9850898 - 9850789
Alignment:
Q  77 tttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaa 175  Q
    |||||||||  ||| ||||||||||||||| || ||||| |||||||||| | ||||||||||||| |||| ||||||||||||| ||||||||||||||    
T  9850898 tttttcgtatggttcttaactaaaaatacatattttttg-atataacaaattttgagaaaattatggatttaagaaaatcatggtaaatttagttaagaa 9850800  T
Q  176 ctatatgaaaa 186  Q
    | ||| |||||    
T  9850799 ccatacgaaaa 9850789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 7737109 - 7737230
Alignment:
Q  92 ttaactaaaaatacacatgtttt-ggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaactatatgaaaaaca 189  Q
    ||||||||||||||| || |||| |||||||||||||| |||||||||||| | |||||| |||||||||| ||||||||||||||  ||| ||||| ||    
T  7737109 ttaactaaaaatacatatttttttggatataacaaactttgagaaaattatggctttgaggaaatcatggtaaatttagttaagaatcatacgaaaagca 7737208  T
Q  190 tacaaggagttgtacctaagtt 211  Q
       ||||| |||||||||||||    
T  7737209 cctaaggaattgtacctaagtt 7737230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 6605780 - 6605858
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagt 169  Q
    ||||||||||||||| ||  ||||||||||||||||| ||||||||||||| ||||||| |||||||||| ||||||||    
T  6605780 ttaactaaaaatacatattatttggatataacaaactttgagaaaattatgcatttgaggaaatcatggtaaatttagt 6605858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 23835907 - 23836017
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgtttt-ggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaa 175  Q
    ||||||||  ||| ||||||||||||||| || |||| |||||||||||||| |||||||||||| |||||||| |||||||||| ||||| ||||| ||    
T  23835907 ttttcgtatggttcttaactaaaaatacatatttttttggatataacaaactttgagaaaattatggatttgaggaaatcatggtaaattttgttaaaaa 23836006  T
Q  176 ctatatgaaaa 186  Q
    | ||| |||||    
T  23836007 ccatacgaaaa 23836017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 47 - 210
Target Start/End: Original strand, 7116370 - 7116534
Alignment:
Q  47 ggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatt 145  Q
    |||||||| |||| || |||| || || || ||||||||  ||| | |||||||||||||| | | ||||||| ||||| || |||||||||||| ||||    
T  7116370 ggacaaaacttaggtacaattctttagatacttttcgtatggttctcaactaaaaatacacctttgttggatagaacaatctttgagaaaattatggatt 7116469  T
Q  146 tgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaagt 210  Q
    |||  |||| ||||| |||||| |||||||| ||| |||||||||  ||| | ||||||||||||    
T  7116470 tgatgaaattatggtaaatttatttaagaaccatacgaaaaacatctaagaaattgtacctaagt 7116534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 78 - 175
Target Start/End: Complemental strand, 29229504 - 29229405
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaac-tatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaa 175  Q
    ||||||||  ||| ||||||||||||||| || |||||||||||| |||| | |||||||||||| |||||||| |||||||| ||||| ||||||||||    
T  29229504 ttttcgtatggttcttaactaaaaatacatattttttggatataataaacttttgagaaaattatggatttgaggaaatcatgatgaatatagttaagaa 29229405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 78 - 175
Target Start/End: Complemental strand, 29342804 - 29342705
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaac-tatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaa 175  Q
    ||||||||  ||| ||||||||||||||| || |||||||||||| |||| | |||||||||||| |||||||| |||||||| ||||| ||||||||||    
T  29342804 ttttcgtatggttcttaactaaaaatacatattttttggatataataaacttttgagaaaattatggatttgaggaaatcatgatgaatatagttaagaa 29342705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 51 - 175
Target Start/End: Complemental strand, 39243150 - 39243025
Alignment:
Q  51 aaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgag 149  Q
    |||||||||||| |||| || |||||||||| |||  ||| || ||||||||||||| | | |||||||||||||||| ||| ||||| ||  ||||||     
T  39243150 aaaatttagatacaattctttaggtattttttgtatggttcttgactaaaaatacacctatgttggatataacaaactttgataaaatcataaatttgat 39243051  T
Q  150 aaaatcatggtgaatttagttaagaa 175  Q
     |||||| | | ||||||||||||||    
T  39243050 gaaatcacgataaatttagttaagaa 39243025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 10552984 - 10553046
Alignment:
Q  149 gaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    |||||||||||||||||||||||||||  ||| ||||||||   ||||| |||||||||||||    
T  10552984 gaaaatcatggtgaatttagttaagaatcatacgaaaaacacctaaggaattgtacctaagtt 10553046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 20892915 - 20892980
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttt-tggatataacaaactatgagaaaattatg 142  Q
    ||||||||  ||| ||||||||||||||| || ||| ||||||||||||||| |||||||||||||    
T  20892915 ttttcgtatggttcttaactaaaaatacatatttttatggatataacaaactttgagaaaattatg 20892980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 187
Target Start/End: Complemental strand, 17434770 - 17434727
Alignment:
Q  144 tttgagaaaatcatggtgaatttagttaagaactatatgaaaaa 187  Q
    ||||||||||| ||||||||||||||||||||| ||| ||||||    
T  17434770 tttgagaaaattatggtgaatttagttaagaaccatacgaaaaa 17434727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 45 - 211
Target Start/End: Original strand, 48124 - 48291
Alignment:
Q  45 aaggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-ga 143  Q
    |||||||||| |||  |||||||||| ||||  ||||||||  |||||||| |||||||||| || |||||||||||||||||| |||||||||||| ||    
T  48124 aaggacaaaacttacgtataattttttaggtgcttttcgtatggtttttaattaaaaatacatattttttggatataacaaactttgagaaaattatgga 48223  T
Q  144 tttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||  ||||| ||||| |||||||    
T  48224 tttgagaaaatcatggtgaatttagttaagaactatacgaaaagcatctaaggaattgtatctaagtt 48291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 92 - 211
Target Start/End: Complemental strand, 19955037 - 19954917
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaacat 190  Q
    ||||||||||||||| || |||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||| ||     
T  19955037 ttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaactatacgaaaagcac 19954938  T
Q  191 acaaggagttgtacctaagtt 211  Q
    | ||||| |||||||||||||    
T  19954937 ataaggaattgtacctaagtt 19954917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 72 - 211
Target Start/End: Complemental strand, 14387161 - 14387021
Alignment:
Q  72 aggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagtt 170  Q
    |||| |||||||||  ||| ||||||||||||||| || |||||||||||| ||||| |||||||||||| |||||||| ||||||||||||||||||||    
T  14387161 aggtgtttttcgtatggttcttaactaaaaatacatattttttggatataataaactttgagaaaattatggatttgaggaaatcatggtgaatttagtt 14387062  T
Q  171 aagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    |||||| ||| ||||  |||  ||||| |||||||||||||    
T  14387061 aagaaccatacgaaatgcatctaaggaattgtacctaagtt 14387021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 92 - 211
Target Start/End: Complemental strand, 27241050 - 27240930
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaacat 190  Q
    ||||||||||||| | || |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||| ||     
T  27241050 ttaactaaaaatatatattttttggatataacaaactttgagaaaattatggatttgagaaaatcatggtgaatttagttaagaaccatacgaaaagcac 27240951  T
Q  191 acaaggagttgtacctaagtt 211  Q
      ||||| |||||||||||||    
T  27240950 ctaaggaattgtacctaagtt 27240930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 78 - 208
Target Start/End: Original strand, 5189500 - 5189631
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||||| || |||||||||||||||||| |||||||||||| ||||| || ||||||||||||||||||||||||||    
T  5189500 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttaaggaaatcatggtgaatttagttaagaac 5189599  T
Q  177 tatatgaaaaacatacaaggagttgtacctaa 208  Q
     ||| ||||| |||  ||||| ||||||||||    
T  5189600 catacgaaaagcatctaaggaattgtacctaa 5189631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 42 - 186
Target Start/End: Complemental strand, 2125246 - 2125101
Alignment:
Q  42 aaaaaggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat 141  Q
    |||||||| ||||||||| || ||||| | ||||  |||||||| |||| ||||||||||||||| || |||| ||||||||||||| ||||||||||||    
T  2125246 aaaaaggagaaaatttaggtacaatttcttaggtgcttttcgtatagttcttaactaaaaatacatatttttttgatataacaaactttgagaaaattat 2125147  T
Q  142 -gatttgagaaaatcatggtgaatttagttaagaactatatgaaaa 186  Q
      |||| | ||||||||||||||||||||||||||| ||| |||||    
T  2125146 aaatttaaaaaaatcatggtgaatttagttaagaaccatacgaaaa 2125101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 2854672 - 2854538
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||| | || |||||||||||||||||| ||||||||||||| ||||||| ||||||| ||||||||||||||||||    
T  2854672 ttttcgtatggttcttaactaaaaatatatattttttggatataacaaactttgagaaaattatgaatttgaggaaatcatagtgaatttagttaagaac 2854573  T
Q  177 tatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     ||| |||||  ||  ||||| |||||||||||||    
T  2854572 catacgaaaagtatctaaggaattgtacctaagtt 2854538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 77 - 186
Target Start/End: Original strand, 6079414 - 6079524
Alignment:
Q  77 tttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaa 175  Q
    |||||||||  ||| || |||||||||||| || |||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||    
T  6079414 tttttcgtacggttcttcactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaa 6079513  T
Q  176 ctatatgaaaa 186  Q
    | ||| |||||    
T  6079514 ccatacgaaaa 6079524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 23698642 - 23698508
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||| | || |||||||||||||||||| ||||||||||||| ||||||| ||||||| ||||||||||||||||||    
T  23698642 ttttcgtatggttcttaactaaaaatatatattttttggatataacaaactttgagaaaattatgaatttgaggaaatcatagtgaatttagttaagaac 23698543  T
Q  177 tatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     ||| |||||  ||  ||||| |||||||||||||    
T  23698542 catacgaaaagtatctaaggaattgtacctaagtt 23698508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 48954354 - 48954220
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||| | || |||||||||||||||||| ||||||||||||| ||||||| ||||||| ||||||||||||||||||    
T  48954354 ttttcgtatggttcttaactaaaaatatatattttttggatataacaaactttgagaaaattatgaatttgaggaaatcatagtgaatttagttaagaac 48954255  T
Q  177 tatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     |||||||||  |   ||||| |||||||||||||    
T  48954254 catatgaaaagtacctaaggaattgtacctaagtt 48954220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 50627162 - 50627296
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||||| || |||||||||||||||||| |||||||||||| |||||||| |||||||| |   |||||||||||||    
T  50627162 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgaggaaatcatgatatttttagttaagaac 50627261  T
Q  177 tatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     ||| ||||| |||| ||||| |||||||||||||    
T  50627262 catacgaaaagcatataaggaattgtacctaagtt 50627296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 45 - 176
Target Start/End: Complemental strand, 3607902 - 3607770
Alignment:
Q  45 aaggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-ga 143  Q
    ||||| |||| |||| || ||||| | ||||  ||||||||  ||| ||||||||||||||| || |||||||||||||||||| |||||||||||| ||    
T  3607902 aaggagaaaacttaggtacaatttcttaggtgcttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatgga 3607803  T
Q  144 tttgagaaaatcatggtgaatttagttaagaac 176  Q
    |||||| |||||||| |||||||||||||||||    
T  3607802 tttgaggaaatcatgatgaatttagttaagaac 3607770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 46 - 160
Target Start/End: Original strand, 9895252 - 9895367
Alignment:
Q  46 aggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-at 144  Q
    |||| ||||||||| |||||||||| ||||| ||||||||  ||| ||||||||||||||| || |||| ||||||||||||| ||||||||||||| ||    
T  9895252 aggagaaaatttaggtataattttttaggtacttttcgtatggttcttaactaaaaatacatatttttttgatataacaaactttgagaaaattatgtat 9895351  T
Q  145 ttgagaaaatcatggt 160  Q
    ||||| ||||||||||    
T  9895352 ttgaggaaatcatggt 9895367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 44 - 204
Target Start/End: Original strand, 15324623 - 15324785
Alignment:
Q  44 aaaggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgtttt-ggatataacaaactatgagaaaattatg 142  Q
    |||||| |||| |||| || ||||| | ||||  ||||||||  ||| ||||||||||||||| || |||| |||||||||||||| |||||||||||||    
T  15324623 aaaggagaaaacttaggtacaatttcttaggtgcttttcgtatggttcttaactaaaaatacatatttttttggatataacaaactttgagaaaattatg 15324722  T
Q  143 -atttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtac 204  Q
     ||||||| ||||||| |||||||||||||||||| ||| ||||| || | ||||| ||||||    
T  15324723 gatttgaggaaatcatagtgaatttagttaagaaccatacgaaaagcacataaggaattgtac 15324785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 72 - 211
Target Start/End: Complemental strand, 47940717 - 47940576
Alignment:
Q  72 aggtatttttcgtagagtttttaactaaaaatacacatgtttt-ggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagt 169  Q
    |||| |||||||||  ||| ||||||||||||||| || |||| |||||||||||||| ||||||||||||| ||| ||| |||||||||||||||||||    
T  47940717 aggtgtttttcgtatggttcttaactaaaaatacatatttttttggatataacaaactttgagaaaattatggattcgaggaaatcatggtgaatttagt 47940618  T
Q  170 taagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    ||||||| ||| ||||| ||   ||| | |||||||||||||    
T  47940617 taagaaccatacgaaaagcacctaagaaattgtacctaagtt 47940576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 78 - 208
Target Start/End: Complemental strand, 9978192 - 9978060
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgtttt-ggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaa 175  Q
    ||||||||  ||| ||||||||||||||| || |||| |||||||||||||| ||||||||||||| ||||||| ||||||| |||||||||||||||||    
T  9978192 ttttcgtatggttcttaactaaaaatacatatttttttggatataacaaactttgagaaaattatggatttgaggaaatcatagtgaatttagttaagaa 9978093  T
Q  176 ctatatgaaaaacatacaaggagttgtacctaa 208  Q
      ||| ||||| || | ||||| ||||||||||    
T  9978092 tcatacgaaaagcacataaggaattgtacctaa 9978060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 92 - 186
Target Start/End: Complemental strand, 42561421 - 42561326
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaactatatgaaaa 186  Q
    ||||||||||||||| || |||||||||||||||||| |||||||||||| ||| |||  |||||||||||||||||||||||||| ||| |||||    
T  42561421 ttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatatgaagaaatcatggtgaatttagttaagaaccatacgaaaa 42561326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 27926392 - 27926257
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgtttt--ggatataacaaactatgagaaaattatgatttgagaaaatcatggtgaatttagttaagaa 175  Q
    ||||||||  ||| ||||||||||||||| || ||||  |||||||||||||| |||||||||||||  ||||| ||||||  |||||||||||||||||    
T  27926392 ttttcgtatggttcttaactaaaaatacatattttttttggatataacaaactttgagaaaattatggattgaggaaatcacagtgaatttagttaagaa 27926293  T
Q  176 ctatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    | ||| ||||| || | ||||| || ||||||||||    
T  27926292 ccatacgaaaagcacataaggaattatacctaagtt 27926257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 72 - 211
Target Start/End: Complemental strand, 27928444 - 27928304
Alignment:
Q  72 aggtatttttcgtagagtttttaactaaaaatacacatgtttt-ggatataacaaactatgagaaaattatgatttgagaaaatcatggtgaatttagtt 170  Q
    |||| |||||||||  ||| ||||||||||||||| || |||| |||||||||||||| |||||||||||||  ||||| ||||||  ||||||||||||    
T  27928444 aggtgtttttcgtatggttcttaactaaaaatacatatttttttggatataacaaactttgagaaaattatggattgaggaaatcacagtgaatttagtt 27928345  T
Q  171 aagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    |||||| |||  |||| || | ||||| ||||| |||||||    
T  27928344 aagaaccatacaaaaagcacataaggaattgtatctaagtt 27928304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 957653 - 957732
Alignment:
Q  111 ttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaaca 189  Q
    |||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||  ||| ||||||||    
T  957653 tttttgatataacaaactttgagaaaattatggatttgagaaaatcatggtgaatttagttaagaatcatacgaaaaaca 957732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 78 - 208
Target Start/End: Original strand, 1387809 - 1387940
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||||| || |||||||||||| ||||| ||||||||||||| ||||||| ||||||||||   |||||||||||||    
T  1387809 ttttcgtatggttcttaactaaaaatacatattttttggatataataaactttgagaaaattatgaatttgaggaaatcatggtatctttagttaagaac 1387908  T
Q  177 tatatgaaaaacatacaaggagttgtacctaa 208  Q
     ||| ||||| ||   ||||| ||||||||||    
T  1387909 catacgaaaagcacctaaggaattgtacctaa 1387940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 49284401 - 49284300
Alignment:
Q  111 ttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaag 209  Q
    |||||||||||||||||| ||| ||||||||| |||| ||||||||||||||||||||||||||||| |||  |||||||   ||| | |||||||||||    
T  49284401 ttttggatataacaaactttgaaaaaattatggatttaagaaaatcatggtgaatttagttaagaaccatacaaaaaacaactaagaaattgtacctaag 49284302  T
Q  210 tt 211  Q
    ||    
T  49284301 tt 49284300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 4299541 - 4299435
Alignment:
Q  72 aggtatttttcgtagagtttttaactaaaaatacacatgtttt---ggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaattta 167  Q
    |||| |||||||||  ||| ||||||||||||||| || ||||   |||||||||||||| |||||||||||| |||||||| |||| ||||||||||||    
T  4299541 aggtgtttttcgtatggttcttaactaaaaatacatatttttttttggatataacaaactttgagaaaattatggatttgaggaaataatggtgaattta 4299442  T
Q  168 gttaaga 174  Q
    |||||||    
T  4299441 gttaaga 4299435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 51789735 - 51789603
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| |||||||||||  ||||| |||| ||||||||| ||| ||||||||||||| | ||||| |||||||||||||||||||||| |||    
T  51789735 ttttcgtatggttcttaactaaaaa--cacattttttagatataacatactttgagaaaattatggaattgaggaaatcatggtgaatttagttaaaaac 51789638  T
Q  177 tatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     ||| ||||| ||   ||||| |||||||||||||    
T  51789637 catacgaaaatcacctaaggaattgtacctaagtt 51789603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 19797121 - 19796987
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||||| || |||||||||||||||||| ||| |||||||| |||||||| ||||||||||   ||||||||| |||    
T  19797121 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttgaaaaaattatggatttgaggaaatcatggtatttttagttaaaaac 19797022  T
Q  177 tatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     ||| ||||| ||   ||| | |||||||||||||    
T  19797021 catacgaaaagcacctaagaaattgtacctaagtt 19796987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 50162645 - 50162544
Alignment:
Q  111 ttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaag 209  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||| |||| ||| |||  ||||| |   ||||| |||||||||||    
T  50162645 ttttggatataacaaactttgagaaaattatagatttgagaaaatcacggtgaatttaattaaaaaccatacaaaaaatacctaaggaattgtacctaag 50162546  T
Q  210 tt 211  Q
    ||    
T  50162545 tt 50162544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 64 - 175
Target Start/End: Complemental strand, 48645167 - 48645056
Alignment:
Q  64 aatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtga 162  Q
    ||||||| ||||  ||||||||| ||| ||||||||||||||| || |||| ||||||||||||| |||||||||||| |||||||| |||||||| |      
T  48645167 aattttttaggtgcttttcgtag-gttcttaactaaaaatacatattttttagatataacaaactttgagaaaattatggatttgaggaaatcatgatat 48645069  T
Q  163 atttagttaagaa 175  Q
     ||||||||||||    
T  48645068 ttttagttaagaa 48645056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 92 - 186
Target Start/End: Original strand, 27670188 - 27670283
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaactatatgaaaa 186  Q
    ||||||||||||||| || ||||| |||||| ||||| |||||||||||| ||||| || |||||||| ||||||||||||| ||| ||| |||||    
T  27670188 ttaactaaaaatacatattttttgaatataaaaaactttgagaaaattatggatttaaggaaatcatgatgaatttagttaaaaaccatacgaaaa 27670283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 117 - 211
Target Start/End: Original strand, 40647188 - 40647283
Alignment:
Q  117 atataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    |||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||| ||  ||| ||||| ||   ||||| |||||||||||||    
T  40647188 atataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaaaaatcatacgaaaagcacctaaggaattgtacctaagtt 40647283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 26208471 - 26208565
Alignment:
Q  94 aactaaaaatacacatgtttt-ggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaactatatgaaaa 186  Q
    ||||||||||||| || |||| |||||||||||||| |||||||||||| |||||||  |||| ||||||||||||||| ||||| ||| |||||    
T  26208471 aactaaaaatacatatttttttggatataacaaactttgagaaaattatggatttgaagaaattatggtgaatttagttcagaaccatacgaaaa 26208565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 173
Target Start/End: Original strand, 29598353 - 29598450
Alignment:
Q  77 tttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaag 173  Q
    |||||||||  ||| | ||||||||||||| || ||||  |||||||||||| |||||||||||| ||||| || ||||||| |||||||||||||||    
T  29598353 tttttcgtatggttatcaactaaaaatacatatttttttaatataacaaactttgagaaaattatggatttaaggaaatcatagtgaatttagttaag 29598450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 120 - 211
Target Start/End: Original strand, 36880584 - 36880676
Alignment:
Q  120 taacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    ||||||||| ||||||||||||| ||||||| ||||||||||   ||||||||||||| ||| ||||| |||  ||||| |||||||||||||    
T  36880584 taacaaactttgagaaaattatggatttgaggaaatcatggtatttttagttaagaaccatacgaaaagcatctaaggaattgtacctaagtt 36880676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 77 - 189
Target Start/End: Original strand, 21930410 - 21930521
Alignment:
Q  77 tttttcgtagagtttttaactaaaaatacacatgtttt-ggatataacaaactatgagaaaattatgatttgagaaaatcatggtgaatttagttaagaa 175  Q
    |||||||||  ||| ||||||||||||||| || |||| |||||||||||||| | |||||||||||  || | | ||  ||||||||||||||||||||    
T  21930410 tttttcgtatggttcttaactaaaaatacatatttttttggatataacaaactttaagaaaattatggatttaaagaa--atggtgaatttagttaagaa 21930507  T
Q  176 ctatatgaaaaaca 189  Q
    | ||| ||||||||    
T  21930508 ccatacgaaaaaca 21930521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 92 - 220
Target Start/End: Original strand, 28244003 - 28244126
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaactatatgaaaaacat 190  Q
    |||||||||||||||  | |||||||||||||||||| |||||||||||| ||||| || |||      |||||||||||||||| ||||  ||||||||    
T  28244003 ttaactaaaaatacatcttttttggatataacaaactttgagaaaattatggatttaaggaaa------tgaatttagttaagaattatacaaaaaacat 28244096  T
Q  191 acaaggagttgtacctaagttattttcttt 220  Q
    | ||| | ||||||| ||||| ||| ||||    
T  28244097 ataagaaattgtaccgaagttttttccttt 28244126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 22339110 - 22339025
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaac 176  Q
    |||||||||||||||| | | ||||||| |||| ||| ||||||||| ||| ||||||  |||||||||||| |||||||||||||    
T  22339110 ttaactaaaaatacacctttgttggatagaacagactttgagaaaatgatggatttgatgaaatcatggtgagtttagttaagaac 22339025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 186
Target Start/End: Complemental strand, 51276835 - 51276726
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||| |||||||||||  | ||||  |||||| ||||| ||||||||||||| ||||||| |||||||  |||||||||||||||||    
T  51276835 ttttcgtatggttcttagctaaaaatacattttttttttatataataaactttgagaaaattatggatttgaggaaatcataatgaatttagttaagaac 51276736  T
Q  177 tatatgaaaa 186  Q
     ||| |||||    
T  51276735 catacgaaaa 51276726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 16755255 - 16755315
Alignment:
Q  77 tttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaa 137  Q
    |||||| || |||| ||||||||||||||| ||||||||||||||||||||| ||| ||||    
T  16755255 tttttcatatagttcttaactaaaaatacatatgttttggatataacaaactttgaaaaaa 16755315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 16518407 - 16518353
Alignment:
Q  111 ttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaat 164  Q
    ||||||||| |||||||||||||||||||||| | |||||||||| |||||||||    
T  16518407 ttttggatacaacaaactatgagaaaattatgtaattgagaaaattatggtgaat 16518353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 92 - 176
Target Start/End: Original strand, 2302448 - 2302533
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattatga-tttgagaaaatcatggtgaatttagttaagaac 176  Q
    |||||||||| ||||  | | |||||| || | |||| |||||||||||||| |||||| |||||||||||||||| |||||||||    
T  2302448 ttaactaaaattacatctttcttggatgtagcgaactttgagaaaattatgaatttgaggaaatcatggtgaattttgttaagaac 2302533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 50856428 - 50856363
Alignment:
Q  111 ttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaa 175  Q
    |||||||||||||||| | |||||||||||| || ||||| |||| ||||||||||||| ||||||    
T  50856428 ttttggatataacaaattttgagaaaattatggacttgaggaaataatggtgaatttagctaagaa 50856363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 36007920 - 36007861
Alignment:
Q  118 tataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||||| ||||||||||||| ||||||| |||||||||  | |||||||||||||    
T  36007920 tataacaaactttgagaaaattatgtatttgaggaaatcatggatagtttagttaagaac 36007861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 172
Target Start/End: Complemental strand, 28431850 - 28431747
Alignment:
Q  72 aggtatttttcgtagagtttttaactaaaaatacacatgt--tttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttag 168  Q
    |||| ||||| ||| |||||||||||||||||| || | |  ||||||||||| ||| | | | |||||||| |||||||  |||||||| |||||||||    
T  28431850 aggtgttttttgtatagtttttaactaaaaatataccttttgtttggatataataaattttaaaaaaattatagatttgaagaaatcatgatgaatttag 28431751  T
Q  169 ttaa 172  Q
    ||||    
T  28431750 ttaa 28431747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 45879 - 45999
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaacat 190  Q
    ||||||||||||||| || |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||| ||     
T  45879 ttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgagaaaatcatggtgaatttagttaagaaccataagaaaagcac 45978  T
Q  191 acaaggagttgtacctaagtt 211  Q
      ||||| |||||||||||||    
T  45979 ctaaggaattgtacctaagtt 45999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 72 - 211
Target Start/End: Original strand, 40891038 - 40891178
Alignment:
Q  72 aggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagtt 170  Q
    |||| |||||||||  ||| ||||||||||||||| || |||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||    
T  40891038 aggtgtttttcgtacggttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagtt 40891137  T
Q  171 aagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    |||||| ||| ||||| ||   ||||| |||||||||||||    
T  40891138 aagaaccatacgaaaagcacctaaggaattgtacctaagtt 40891178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 38629505 - 38629639
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatga-tttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||||| || |||||||||||| ||||| |||||||||||||| |||||| ||||||||||||||||||||||||||    
T  38629505 ttttcgtatggttcttaactaaaaatacatattttttggatataataaactttgagaaaattatgaatttgaggaaatcatggtgaatttagttaagaac 38629604  T
Q  177 tatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     ||| ||||||||   ||||| |||||||||||||    
T  38629605 catacgaaaaacacctaaggaattgtacctaagtt 38629639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 47 - 211
Target Start/End: Complemental strand, 24741994 - 24741829
Alignment:
Q  47 ggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-att 145  Q
    ||||||||||| | || |||| |||||||  ||||||||  ||| |||||||||||||||| | | ||| |||||| ||||| ||||||||| ||| |||    
T  24741994 ggacaaaatttgggtacaattcttgaggtgattttcgtatggttcttaactaaaaatacacctatgttgcatataataaactctgagaaaatcatggatt 24741895  T
Q  146 tgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    |||| |||||||||||||||||||||||||| ||| ||||| ||   ||||| |||||||||||||    
T  24741894 tgaggaaatcatggtgaatttagttaagaaccatacgaaaagcacctaaggaattgtacctaagtt 24741829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 44 - 211
Target Start/End: Original strand, 38520015 - 38520183
Alignment:
Q  44 aaaggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg- 142  Q
    |||||| ||||||||| |||||||  | || |  ||||||||  ||| ||||||||||||| | || |||||||||||||||||| |||||||||||||     
T  38520015 aaaggagaaaatttaggtataattccttagttgcttttcgtatggttcttaactaaaaatatatattttttggatataacaaactttgagaaaattatga 38520114  T
Q  143 atttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    ||||||| |||||||||||||||||||||| ||  ||| ||||| ||   ||||| |||||||||||||    
T  38520115 atttgaggaaatcatggtgaatttagttaaaaaacatacgaaaagcacttaaggaattgtacctaagtt 38520183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 78 - 208
Target Start/End: Original strand, 37114269 - 37114400
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| |||| |||||||||| || |||||||||||| ||||| ||||||||||||| |||| |||||||||||||||||||||||||||||    
T  37114269 ttttcgtatggttcttaattaaaaatacatattttttggatataataaactttgagaaaattatggatttaagaaaatcatggtgaatttagttaagaac 37114368  T
Q  177 tatatgaaaaacatacaaggagttgtacctaa 208  Q
     |||  ||||||||  || || ||||||||||    
T  37114369 catacaaaaaacatctaaagaattgtacctaa 37114400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 43 - 211
Target Start/End: Original strand, 12234462 - 12234632
Alignment:
Q  43 aaaaggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataac-aaactatgagaaaattat 141  Q
    ||||||| |||| |||| ||||||| ||  |||  ||||||||  ||| ||||||||||||||| || ||||||||||||| ||||| ||||||||||||    
T  12234462 aaaaggagaaaacttaggtataattctttgggtgcttttcgtatggttcttaactaaaaatacatattttttggatataacaaaactttgagaaaattat 12234561  T
Q  142 g-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    | ||||||| ||||||| |||||||||||||| ||| ||| ||||| |||  ||| | |||||||||||||    
T  12234562 gaatttgaggaaatcatcgtgaatttagttaataaccatacgaaaagcatctaagaaattgtacctaagtt 12234632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 15882245 - 15882366
Alignment:
Q  92 ttaactaaaaatacacatgtttt-ggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaaca 189  Q
    ||||||||||||||| || |||| ||||||||| |||| |||||| |||||| |||||||||||||||||||||||||||||||||| ||| ||||| ||    
T  15882245 ttaactaaaaatacatatttttttggatataactaactttgagaatattatggatttgagaaaatcatggtgaatttagttaagaaccatacgaaaagca 15882344  T
Q  190 tacaaggagttgtacctaagtt 211  Q
       ||||| |||||||||||||    
T  15882345 cctaaggaattgtacctaagtt 15882366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 78 - 208
Target Start/End: Complemental strand, 29781099 - 29780968
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||||| || |||||||||||||||||| |||||||||||| |||||||| |||| ||||| ||||||||||| |||    
T  29781099 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgaggaaattatggtaaatttagttaaaaac 29781000  T
Q  177 tatatgaaaaacatacaaggagttgtacctaa 208  Q
     ||| ||||| ||   ||||| ||||||||||    
T  29780999 catacgaaaagcacctaaggaattgtacctaa 29780968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 46 - 211
Target Start/End: Complemental strand, 17426802 - 17426634
Alignment:
Q  46 aggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaa--tacacatgttttggatataacaaactatgagaaaattat-g 142  Q
    |||| |||| |||| || ||||||| ||||  ||||||||  ||| |||||||||||  || |  | |||||||||||||||||| |||||||||||| |    
T  17426802 aggagaaaacttaggtacaattttttaggtgcttttcgtatggttcttaactaaaaatgtatattttttttggatataacaaactttgagaaaattatag 17426703  T
Q  143 atttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    ||||||| |||||||||||||||||||||||||| ||| ||||| ||   || || |||||||||||||    
T  17426702 atttgaggaaatcatggtgaatttagttaagaaccatacgaaaagcacctaatgaattgtacctaagtt 17426634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 8210368 - 8210488
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaactatatgaaaaacat 190  Q
    ||||||||| ||| | || |||||||||||||||||| |||||||||||| |||||||| |||||||| ||||||| ||||||||  |||  ||||||||    
T  8210368 ttaactaaatatatatattttttggatataacaaactttgagaaaattatggatttgaggaaatcatgatgaatttggttaagaatcatacaaaaaacat 8210467  T
Q  191 acaaggagttgtacctaagtt 211  Q
      ||||| |||||| ||||||    
T  8210468 ctaaggaattgtacttaagtt 8210488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 43 - 189
Target Start/End: Original strand, 38405134 - 38405282
Alignment:
Q  43 aaaaggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaataca-catgttttggatataacaaactatgagaaaattat 141  Q
    ||||||||||||||||| || |||| |  | ||| |||| |||  ||| ||||||||||||||| | | |||||||||||||||||| |||||||||||     
T  38405134 aaaaggacaaaatttaggtacaattatgtaagtactttttgtatggttcttaactaaaaatacatctttttttggatataacaaactttgagaaaattac 38405233  T
Q  142 g-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaaca 189  Q
    | |||| ||||||||||  ||||||||||||||||| |||  |||||||    
T  38405234 gaatttaagaaaatcattatgaatttagttaagaaccatacaaaaaaca 38405282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 92 - 186
Target Start/End: Complemental strand, 4262102 - 4262007
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaactatatgaaaa 186  Q
    |||| |||||||||| || ||||| |||||||||||| |||||||||||| || ||||| ||||||| |||||||||||||||||| ||| |||||    
T  4262102 ttaattaaaaatacatattttttgaatataacaaactttgagaaaattatggacttgaggaaatcatagtgaatttagttaagaaccatacgaaaa 4262007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 78 - 175
Target Start/End: Complemental strand, 23940945 - 23940846
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttgga-tataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaa 175  Q
    ||||||||  ||||||||||||||||||| || ||||  | ||||||||||| ||||||||||| | ||||||| |||||||||||||||||||||||||    
T  23940945 ttttcgtatggtttttaactaaaaatacatatttttttaaatataacaaactttgagaaaattacggatttgaggaaatcatggtgaatttagttaagaa 23940846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 89 - 211
Target Start/End: Complemental strand, 14834798 - 14834678
Alignment:
Q  89 tttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatga-tttgagaaaatcatggtgaatttagttaagaactatatgaaaaa 187  Q
    ||||||||||||||||||  | ||||| |||||||||||| |||   |||||||| ||| ||||||||||||||||||||||||||||| ||| |||||     
T  14834798 tttttaactaaaaatacatcttttttgtatataacaaactttga---aattatgaatttaagaaaatcatggtgaatttagttaagaaccatacgaaaag 14834702  T
Q  188 catacaaggagttgtacctaagtt 211  Q
    ||   ||||| |||||| ||||||    
T  14834701 cacgtaaggaattgtacgtaagtt 14834678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 92 - 176
Target Start/End: Original strand, 40393768 - 40393852
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattatgatttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||||||||| || ||| |||||||||||| | |||||||||||  ||||||| |||| ||||||||||||| |||||||    
T  40393768 ttaactaaaaatacatatttttgggatataacaaattttgagaaaattaaaatttgaggaaattatggtgaatttagctaagaac 40393852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 11828698 - 11828624
Alignment:
Q  116 gatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaaca 189  Q
    ||||||||||||| ||||||||| ||| ||||||| |||| ||||||||||||||||||||| ||| ||||||||    
T  11828698 gatataacaaactttgagaaaataatggatttgaggaaattatggtgaatttagttaagaaccatacgaaaaaca 11828624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 24211418 - 24211284
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| |||| || ||||||| || |||| |||||||||||||||||||||||||| || || || |||| | |||||||||| ||||||||    
T  24211418 ttttcgtatggttcttaaatagaaatacatattttttagatataacaaactatgagaaaattatggaattaaggaaattacggtgaatttaattaagaac 24211319  T
Q  177 tatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     ||| ||||| ||   || || |||||||||||||    
T  24211318 catacgaaaagcacctaaagaattgtacctaagtt 24211284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 33100785 - 33100651
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||| ||| || |||| ||||||||||||| |||||||||||| |||||||| |||| | |||   |||||||||||||    
T  33100785 ttttcgtacggttcttaactaaaaaaacatatttttttgatataacaaactttgagaaaattatggatttgaggaaataacggtatttttagttaagaac 33100686  T
Q  177 tatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     ||| ||||| ||   ||| | |||||||||||||    
T  33100685 catacgaaaagcacctaagaaattgtacctaagtt 33100651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 220
Target Start/End: Original strand, 35467216 - 35467344
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaacat 190  Q
    |||||||||||||||  | |||||||  ||||||||| | ||||||||||| |||| |  |||||||| ||||||||||||||||| ||| ||||| ||     
T  35467216 ttaactaaaaatacatcttttttggag-taacaaactttaagaaaattatggatttaaagaaatcatgatgaatttagttaagaaccatacgaaaagcac 35467314  T
Q  191 acaaggagttgtacctaagttattttcttt 220  Q
    | ||||| |||||| |||||| ||| ||||    
T  35467315 ataaggaattgtacgtaagttttttccttt 35467344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 92 - 211
Target Start/End: Complemental strand, 30259192 - 30259072
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaacat 190  Q
    ||||||||||||||| || |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||| ||     
T  30259192 ttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgagaaaatcatggtgaatttagttaagaaccataggaaaagcac 30259093  T
Q  191 acaaggagttgtacctaagtt 211  Q
      ||||| |||||||||||||    
T  30259092 ctaaggaattgtacctaagtt 30259072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 78 - 209
Target Start/End: Original strand, 30594724 - 30594856
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaac 176  Q
    |||||| | |||| ||||||||||||||| || |||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||    
T  30594724 ttttcgcatagttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaac 30594823  T
Q  177 tatatgaaaaacatacaaggagttgtacctaag 209  Q
     ||| ||||| |||  ||||| |||||||||||    
T  30594824 catacgaaaagcatctaaggaattgtacctaag 30594856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 24836051 - 24836185
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| | ||||||||||||| || |||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  24836051 ttttcgtatggttctnaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaac 24836150  T
Q  177 tatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     ||| ||||| ||   ||||| |||||||||||||    
T  24836151 catacgaaaagcacctaaggaattgtacctaagtt 24836185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 34052310 - 34052444
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||||| || |||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||| |||||||    
T  34052310 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatgaatttgaggaaatcatggtgaatttagctaagaac 34052409  T
Q  177 tatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     ||| ||||| ||   ||||| |||||||||||||    
T  34052410 catacgaaaagcacctaaggaattgtacctaagtt 34052444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 12142257 - 12142352
Alignment:
Q  111 ttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacc 205  Q
    ||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| | ||||| |||||||    
T  12142257 ttttggatataacaatctttgagaaaattatggatttgagaaaatcatggtgaatttagttaagaactatacgaaaaacacataaggaattgtacc 12142352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 51 - 211
Target Start/End: Complemental strand, 3953209 - 3953048
Alignment:
Q  51 aaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgag 149  Q
    |||| ||||||| ||||  | ||||| |||| |||  ||| ||||||||||||||| || |||||||||||||||||| || ||||||||| ||||||||    
T  3953209 aaaacttagatacaattacttaggtactttttgtatggttcttaactaaaaatacatattttttggatataacaaactttgtgaaaattatggatttgag 3953110  T
Q  150 aaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     |||||||||||||||||||||| ||| ||| |||||  | | ||||| |||||||||||||    
T  3953109 gaaatcatggtgaatttagttaaaaaccatacgaaaagtacataaggaattgtacctaagtt 3953048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 42 - 176
Target Start/End: Complemental strand, 9285890 - 9285755
Alignment:
Q  42 aaaaaggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat 141  Q
    |||||||| ||||||||| || |||| || ||||| ||||||||  ||| |||| |||||||||| || |||||||||||||||||| ||| ||||||||    
T  9285890 aaaaaggagaaaatttaggtacaattctttaggtacttttcgtatggttcttaaataaaaatacatattttttggatataacaaactttgataaaattat 9285791  T
Q  142 -gatttgagaaaatcatggtgaatttagttaagaac 176  Q
      ||||||| ||||||||||||||||| ||||||||    
T  9285790 aaatttgaggaaatcatggtgaatttaattaagaac 9285755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 42 - 176
Target Start/End: Complemental strand, 9289957 - 9289822
Alignment:
Q  42 aaaaaggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat 141  Q
    |||||||| ||||||||| || |||| || ||||| ||||||||  ||| |||| |||||||||| || |||||||||||||||||| ||| ||||||||    
T  9289957 aaaaaggagaaaatttaggtacaattctttaggtacttttcgtatggttcttaaataaaaatacatattttttggatataacaaactttgataaaattat 9289858  T
Q  142 -gatttgagaaaatcatggtgaatttagttaagaac 176  Q
      ||||||| ||||||||||||||||| ||||||||    
T  9289857 aaatttgaggaaatcatggtgaatttaattaagaac 9289822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 44 - 186
Target Start/End: Original strand, 37093765 - 37093908
Alignment:
Q  44 aaaggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-g 142  Q
    |||||| ||||||||| || ||||| | ||||||||||||||   || |||| |||||||| | || |||||||||||||||||| ||||||||||||      
T  37093765 aaaggagaaaatttaggtacaatttcttaggtatttttcgtatgattcttaattaaaaatatatattttttggatataacaaactttgagaaaattataa 37093864  T
Q  143 atttgagaaaatcatggtgaatttagttaagaactatatgaaaa 186  Q
    ||||||| |||||||||||||||||||||| ||| ||| |||||    
T  37093865 atttgaggaaatcatggtgaatttagttaaaaaccatacgaaaa 37093908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 39617982 - 39617847
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgtttt-ggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaa 175  Q
    |||||||| |||| ||||||||||||| | || |||| |||||||||||||| ||||||||||||| ||| ||| |||||||||||||||||||||||||    
T  39617982 ttttcgtatagttcttaactaaaaataaatatttttttggatataacaaactttgagaaaattatggattggaggaaatcatggtgaatttagttaagaa 39617883  T
Q  176 ctatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    | ||| ||| |||||  ||| | |||||||||||||    
T  39617882 ccatacgaagaacatctaagaaattgtacctaagtt 39617847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 35339418 - 35339284
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| |||| |||||||||| || |||||||||||||||||| |||||||||||| |||||||  |||||||| |||||||||||||||||    
T  35339418 ttttcgtatggttcttaaataaaaatacatattttttggatataacaaactttgagaaaattatggatttgaagaaatcatgatgaatttagttaagaac 35339319  T
Q  177 tatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     ||| ||||| ||   ||||| |||||||||||||    
T  35339318 catacgaaaagcacctaaggaattgtacctaagtt 35339284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 38883252 - 38883386
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||||| || |||||||||||||||||| |||||||||||| |||||||| |||||||| |   |||||||||||||    
T  38883252 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgaggaaatcatgatatttttagttaagaac 38883351  T
Q  177 tatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     ||| ||||| |||  ||||| |||||||||||||    
T  38883352 catacgaaaagcatctaaggaattgtacctaagtt 38883386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 92 - 211
Target Start/End: Complemental strand, 20184365 - 20184244
Alignment:
Q  92 ttaactaaaaatacacatgtttt-ggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaaca 189  Q
    ||||||||||||||| || |||| |||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||  ||| ||||| ||    
T  20184365 ttaactaaaaatacatatttttttggatataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaatcatacgaaaagca 20184266  T
Q  190 tacaaggagttgtacctaagtt 211  Q
       ||||| |||||||||||||    
T  20184265 cctaaggaattgtacctaagtt 20184244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 31231756 - 31231620
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttgga--tataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaaga 174  Q
    ||||||||  ||| ||||||||||||||| || |||||||  ||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||    
T  31231756 ttttcgtatggttcttaactaaaaatacatattttttggacatataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaaga 31231657  T
Q  175 actatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    || |||  |||| ||   ||||| |||||||||||||    
T  31231656 accatacaaaaagcacctaaggaattgtacctaagtt 31231620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 45997634 - 45997549
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||||||||| || |||||||||||| ||||| |||||||||||| |||||||| ||||||||||||||||||||||||||    
T  45997634 ttaactaaaaatacatattttttggatataataaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaac 45997549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 78 - 176
Target Start/End: Complemental strand, 10936610 - 10936511
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||||| || |||||| ||||||||||| |||||||||||| |||||||| || |||||||||||||||||||||||    
T  10936610 ttttcgtatggttcttaactaaaaatacatattttttggttataacaaactttgagaaaattatagatttgaggaagtcatggtgaatttagttaagaac 10936511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 78 - 175
Target Start/End: Original strand, 40358146 - 40358244
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaa 175  Q
    ||||||||  ||| |||||||||||| || || |||| ||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||    
T  40358146 ttttcgtatggttcttaactaaaaatgcatatttttttgatataacaaactttgagaaaattatgaatttgaggaaatcatggtgaatttagttaagaa 40358244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 51 - 217
Target Start/End: Original strand, 29277842 - 29278008
Alignment:
Q  51 aaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgag 149  Q
    |||| |||| || |||| || ||||| |||| |||  ||| |||||||||||||||| ||||||||||| |||||| | |||||||||| || |||| ||    
T  29277842 aaaacttaggtacaattctttaggtactttttgtatggttcttaactaaaaatacac-tgttttggatacaacaaagtttgagaaaattttggatttaag 29277940  T
Q  150 aaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaagttattttc 217  Q
     |||||||||||||||||||||| ||  ||| | |||| ||| ||||| ||||||||||||| |||||    
T  29277941 gaaatcatggtgaatttagttaaaaatcatacggaaaatatataaggaattgtacctaagtttttttc 29278008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 78 - 189
Target Start/End: Complemental strand, 25742571 - 25742463
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||||| || |||||||||||||||||| |||||||||||| |||||||| ||||     |||||||||||||||||    
T  25742571 ttttcgtatggttgttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgaggaaat----atgaatttagttaagaac 25742476  T
Q  177 tatatgaaaaaca 189  Q
     ||| ||||||||    
T  25742475 cataggaaaaaca 25742463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 92 - 186
Target Start/End: Complemental strand, 31521651 - 31521556
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattatga-tttgagaaaatcatggtgaatttagttaagaactatatgaaaa 186  Q
    ||||||||||||  | || |||||||||||| ||||| ||| |||||||||| ||||||||||||||||| ||||||||||||||| ||| |||||    
T  31521651 ttaactaaaaatgaatattttttggatataataaactttgaaaaaattatgaatttgagaaaatcatggtaaatttagttaagaaccatacgaaaa 31521556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 117 - 211
Target Start/End: Complemental strand, 39143813 - 39143718
Alignment:
Q  117 atataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    |||||||||||| |||||| |||||| ||||||| |||| |||||||||||||| |||||| ||| ||||| ||| ||| || |||||||||||||    
T  39143813 atataacaaactttgagaatattatggatttgaggaaattatggtgaatttagtcaagaaccatacgaaaagcatccaatgaattgtacctaagtt 39143718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 187
Target Start/End: Complemental strand, 38989245 - 38989101
Alignment:
Q  47 ggacaaaatttagatataatttttgaggtattttt-cgtagagtttttaactaaaaatacaca--tgttttggatataacaaactatgagaaaattat-g 142  Q
    ||||||||||||| || || |||| |||| ||||| ||||  ||| |||||| ||||||||||  | | || ||||||||||||| |||||||||||| |    
T  38989245 ggacaaaatttaggtacaaatttttaggtgttttttcgtatggttattaactgaaaatacacacctatattagatataacaaactttgagaaaattatag 38989146  T
Q  143 atttgagaaaatcatggtgaatttagttaagaactatatgaaaaa 187  Q
    |||| ||||||| ||| | ||||||||||| ||||||| ||||||    
T  38989145 atttaagaaaattatgataaatttagttaaaaactatacgaaaaa 38989101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 46 - 176
Target Start/End: Original strand, 33749643 - 33749774
Alignment:
Q  46 aggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaata-cacatgttttggatataacaaactatgagaaaattatga- 143  Q
    ||||||||| |||| ||||||| || ||||||||||||||   || ||||||||||||| ||    |||| ||||||| ||||| ||||||||||||||     
T  33749643 aggacaaaacttag-tataattctttaggtatttttcgtatgattcttaactaaaaatatcattatttttagatataataaactttgagaaaattatgaa 33749741  T
Q  144 tttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||| || |||||||| |||||||||||||||||    
T  33749742 tttaaggaaatcatgatgaatttagttaagaac 33749774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 35665756 - 35665696
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaat 138  Q
    ||||||||  ||||||||||||||||||| || |||||||||||||||||| |||||||||    
T  35665756 ttttcgtatggtttttaactaaaaatacatattttttggatataacaaactttgagaaaat 35665696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 176
Target Start/End: Original strand, 48103365 - 48103495
Alignment:
Q  44 aaaggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-g 142  Q
    |||||| |||| |||| || ||||| | |||| |||||||||   || ||||||||||||||| || |||||||||||||||||| |||||  ||||| |    
T  48103365 aaaggagaaaacttaggtacaatttcttaggtgtttttcgtatgattcttaactaaaaatacatattttttggatataacaaactttgagattattatgg 48103464  T
Q  143 atttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||| ||||||    ||||||||||||||||    
T  48103465 atttgaggaaatca---cgaatttagttaagaac 48103495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 211
Target Start/End: Original strand, 10398390 - 10398484
Alignment:
Q  118 tataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    ||||||||||| |||||| |||||| ||||||| |||||||||  ||||||||||||||| |||  |||| |||| |||||  || |||||||||    
T  10398390 tataacaaactttgagaagattatgtatttgaggaaatcatggataatttagttaagaaccatacaaaaagcatataaggaaatgcacctaagtt 10398484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 187
Target Start/End: Complemental strand, 16876560 - 16876486
Alignment:
Q  114 tggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaa 187  Q
    ||||||||||||||| | ||||||||| | |||||||||||||||||| ||||||  ||||||| ||| ||||||    
T  16876560 tggatataacaaactctaagaaaattacggatttgagaaaatcatggtaaatttaagtaagaaccatacgaaaaa 16876486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 24123862 - 24123815
Alignment:
Q  111 ttttggatataacaaactatgagaaaattat-gatttgagaaaatcat 157  Q
    |||||||||||||||||| |||||||||||| |||||||| |||||||    
T  24123862 ttttggatataacaaactttgagaaaattatggatttgaggaaatcat 24123815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 1298957 - 1299077
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaacat 190  Q
    ||||||||||||||| || |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||| ||     
T  1298957 ttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgagaaaatcatggtgaatttagttaagaaccataagaaaagcac 1299056  T
Q  191 acaaggagttgtacctaagtt 211  Q
      ||||| |||||||||||||    
T  1299057 ctaaggaattgtacctaagtt 1299077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 41 - 189
Target Start/End: Original strand, 35360671 - 35360819
Alignment:
Q  41 aaaaaaggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaatta 140  Q
    ||||||||| |||| |||| || ||||| | ||||||||||||||  ||| ||||||||||||||| || |||| ||||||||||||| |||||||||||    
T  35360671 aaaaaaggagaaaacttag-tacaatttattaggtatttttcgtatggttcttaactaaaaatacatattttttagatataacaaactttgagaaaatta 35360769  T
Q  141 t-gatttgagaaaatcatggtgaatttagttaagaactatatgaaaaaca 189  Q
    | ||||| || |||||||||||||||||||||||||| ||| ||||||||    
T  35360770 tggatttaaggaaatcatggtgaatttagttaagaaccatacgaaaaaca 35360819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 72 - 211
Target Start/End: Complemental strand, 42274639 - 42274498
Alignment:
Q  72 aggtatttttcgtagagtttttaactaaaaatacacatgtttt-ggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagt 169  Q
    |||| |||||||||  ||| ||||||||||||| | || |||| |||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||    
T  42274639 aggtgtttttcgtatggttcttaactaaaaatatatatttttttggatataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagt 42274540  T
Q  170 taagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    ||||||| ||| ||||| |||  ||||| |||||||||||||    
T  42274539 taagaaccatacgaaaagcatctaaggaattgtacctaagtt 42274498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 88 - 211
Target Start/End: Original strand, 4552826 - 4552950
Alignment:
Q  88 gtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaactatatgaaaa 186  Q
    ||||||||||||||||| | || |||||||||||||||||| |||||||||||| |||||||| |||||||| ||||||||||||||||| |||   |||    
T  4552826 gtttttaactaaaaataaatattttttggatataacaaactttgagaaaattatggatttgaggaaatcatgatgaatttagttaagaaccatacagaaa 4552925  T
Q  187 acatacaaggagttgtacctaagtt 211  Q
     |||| ||||| |||||||||||||    
T  4552926 gcatataaggaattgtacctaagtt 4552950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 530809 - 530675
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||||| || |||||||||||||||||| |||||||||||| |||||||| |||| |||||||||||||||||||||    
T  530809 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgaggaaatgatggtgaatttagttaagaac 530710  T
Q  177 tatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     |||  |||| ||   ||||| |||||||||||||    
T  530709 catacaaaaagcacctaaggaattgtacctaagtt 530675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 46 - 211
Target Start/End: Original strand, 13204376 - 13204542
Alignment:
Q  46 aggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gat 144  Q
    |||| |||| ||||||| ||||  | ||||| |||| |||  ||| ||||||||||||||| || |||||||||||||||||| || ||||||||| |||    
T  13204376 aggagaaaacttagatacaattacttaggtactttttgtatggttcttaactaaaaatacatattttttggatataacaaactttgtgaaaattatggat 13204475  T
Q  145 ttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    ||||| |||||||||||||||||||||| ||| ||| |||||  | | ||||| |||||||||||||    
T  13204476 ttgaggaaatcatggtgaatttagttaaaaaccatacgaaaagtacataaggaattgtacctaagtt 13204542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 24915901 - 24915800
Alignment:
Q  111 ttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaag 209  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||| ||   ||||| |||||||||||    
T  24915901 ttttggatataacaaactttgagaaaattatggatttgagaaaatcatggtgaatttagttaagaaccatacgaaaagcacctaaggaattgtacctaag 24915802  T
Q  210 tt 211  Q
    ||    
T  24915801 tt 24915800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 44 - 203
Target Start/End: Complemental strand, 20435314 - 20435154
Alignment:
Q  44 aaaggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-g 142  Q
    |||||| |||| |||| || |||| || ||||  ||||||||  ||| ||||||||||||||| || ||||||||||||||||||  ||||||||||| |    
T  20435314 aaaggagaaaacttaggtacaattctttaggtgcttttcgtatggttcttaactaaaaatacatattttttggatataacaaacttcgagaaaattatgg 20435215  T
Q  143 atttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgta 203  Q
    ||||||| |||||||| ||||||||||||||||| ||| ||||| |||  ||||| |||||    
T  20435214 atttgaggaaatcatgatgaatttagttaagaaccatacgaaaagcatctaaggaattgta 20435154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 92 - 211
Target Start/End: Complemental strand, 32318846 - 32318726
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaacat 190  Q
    |||| |||||||| | || |||||||||||||||||| ||||||||||||| || |||| |||||||||||||||||||||||||| ||| ||||| ||     
T  32318846 ttaattaaaaatatatattttttggatataacaaactttgagaaaattatggatctgaggaaatcatggtgaatttagttaagaaccatacgaaaagcac 32318747  T
Q  191 acaaggagttgtacctaagtt 211  Q
    | ||||| |||||||||||||    
T  32318746 ataaggaattgtacctaagtt 32318726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 18417688 - 18417822
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||| | || |||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||| ||||||||    
T  18417688 ttttcgtatggttcttaactaaaaatatatattttttggatataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttaattaagaac 18417787  T
Q  177 tatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     |||  |||| ||   ||||| |||||||||||||    
T  18417788 catacaaaaagcacctaaggaattgtacctaagtt 18417822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 21048844 - 21048711
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||||| || ||||| ||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||    
T  21048844 ttttcgtatggttcttaactaaaaatacatattttttg-atataacaaacttcgagaaaattatggatttgaggaaatcatggtgaatttagttaagaac 21048746  T
Q  177 tatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     ||| ||||| |||  || || |||||||||||||    
T  21048745 catacgaaaagcatctaacgaattgtacctaagtt 21048711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 77 - 175
Target Start/End: Original strand, 4895002 - 4895101
Alignment:
Q  77 tttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaa 175  Q
    ||||| ||| |||| ||||||||||||||| || ||||| |||||||||||| ||||||||||||| ||||||| |||||||||| ||||||||||||||    
T  4895002 ttttttgtatagttcttaactaaaaatacatattttttgaatataacaaactttgagaaaattatgaatttgaggaaatcatggtaaatttagttaagaa 4895101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 24969684 - 24969547
Alignment:
Q  78 ttttcgtagagtttttaactaaaaataca---catgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaag 173  Q
    |||||||| |||| |||||||||||||||     | |||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||    
T  24969684 ttttcgtatagttcttaactaaaaatacatttttttttttggatataacaaactttgagaaaattatgaatttgaggaaatcatggtgaatttagttaag 24969585  T
Q  174 aactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    ||| ||| ||||| ||   || || |||||||||||||    
T  24969584 aaccatacgaaaagcacctaaagaattgtacctaagtt 24969547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 27434641 - 27434775
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaac 176  Q
    |||| ||| |||| |||||||||||||||  | |||||||||||||||||| ||||||||||||| ||||||| |||| ||||| |||||||||||||||    
T  27434641 tttttgtatagttcttaactaaaaatacattttttttggatataacaaactttgagaaaattatgaatttgaggaaattatggtaaatttagttaagaac 27434740  T
Q  177 tatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     ||| ||||| ||   ||||| |||||| ||||||    
T  27434741 catacgaaaagcacctaaggaattgtacttaagtt 27434775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 36 - 211
Target Start/End: Complemental strand, 16995736 - 16995561
Alignment:
Q  36 attttaaaaaaggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaa 135  Q
    |||| |||| ||||||||| ||||||| |||| || | ||  ||||||||  |||||||||||| ||||||  | |||| ||||||||||||| ||| ||    
T  16995736 atttaaaaataggacaaaacttagatacaattctttaagtgattttcgtatggtttttaactaacaatacatcttttttagatataacaaactctgaaaa 16995637  T
Q  136 aattat-gatttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    ||| || | ||||||||||||||| |||||||| |||| ||| ||| ||||||||  |||||| |||||||||||||    
T  16995636 aatgatgggtttgagaaaatcatgttgaatttaattaaaaaccatacgaaaaaca-ccaaggaattgtacctaagtt 16995561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 92 - 211
Target Start/End: Complemental strand, 23928693 - 23928574
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaacat 190  Q
    ||||||||||||| |  | |||||||||||||||| | ||||||||||||| ||||||| |||||||||||||||||||||||||  ||| ||||||||     
T  23928693 ttaactaaaaatatattttttttggatataacaaattttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaatcatacgaaaaaca- 23928595  T
Q  191 acaaggagttgtacctaagtt 211  Q
      ||||| |||||||||||||    
T  23928594 ctaaggaattgtacctaagtt 23928574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 55107569 - 55107689
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaacat 190  Q
    ||||||||||||||| ||  ||||||||||||||||| ||||||||||||| ||||||| |||||||||| |||||||| |||||| |||  |||| ||     
T  55107569 ttaactaaaaatacatattatttggatataacaaactttgagaaaattatgcatttgaggaaatcatggtaaatttagtaaagaaccatacaaaaagcac 55107668  T
Q  191 acaaggagttgtacctaagtt 211  Q
      ||||| |||||||||||||    
T  55107669 ctaaggaattgtacctaagtt 55107689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 92 - 189
Target Start/End: Original strand, 24294512 - 24294610
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattatga-tttgagaaaatcatggtgaatttagttaagaactatatgaaaaaca 189  Q
    |||| |||||||||| || |||| ||||||||||||| ||||||||||| || |||||| |||| ||||||||||||||||||||| ||| ||||||||    
T  24294512 ttaattaaaaatacatatttttttgatataacaaactttgagaaaattacgaatttgaggaaattatggtgaatttagttaagaaccatacgaaaaaca 24294610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 46 - 211
Target Start/End: Complemental strand, 3422601 - 3422435
Alignment:
Q  46 aggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gat 144  Q
    ||||||||| |||| || |||| || |||| |||||||||  ||||||||||||||||| |  | |||  |||| || ||||| |||||||||||| |||    
T  3422601 aggacaaaacttaggtacaattctttaggtgtttttcgtatggtttttaactaaaaatatatctttttacgatacaataaactttgagaaaattatggat 3422502  T
Q  145 ttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    |||||||||||||  | |||||| |||||||||||| ||||| ||   ||| | |||||||||||||    
T  3422501 ttgagaaaatcatactaaatttaattaagaactatacgaaaagcacctaagaaattgtacctaagtt 3422435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 28809973 - 28809891
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtg-aatttagttaa 172  Q
    ||||||| ||||||| || |||||||||||||||| | |||||||||||| |||||||||||||||||||| |||||||||||    
T  28809973 ttaactagaaatacatattttttggatataacaaattttgagaaaattatggatttgagaaaatcatggtgaaatttagttaa 28809891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 55049507 - 55049406
Alignment:
Q  111 ttttggatataacaaactatgagaaaattatga-tttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaag 209  Q
    |||||||||||||||||| ||| |||||||||  |||||| ||||||| |||||||||||||||||||||| ||||| ||   ||||| |||||| ||||    
T  55049507 ttttggatataacaaactttgaaaaaattatgggtttgaggaaatcatagtgaatttagttaagaactatacgaaaagcacctaaggaattgtacataag 55049408  T
Q  210 tt 211  Q
    ||    
T  55049407 tt 55049406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 4688388 - 4688253
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgtttt-ggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaa 175  Q
    ||||||||  ||| |||| |||||||||| || |||| |||||||||||||| |||||||||| || ||||||| ||||||  |||||||||||||||||    
T  4688388 ttttcgtatggttcttaattaaaaatacatatttttttggatataacaaactttgagaaaattgtgaatttgaggaaatcacagtgaatttagttaagaa 4688289  T
Q  176 ctatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    | ||| ||||| ||   ||| | |||||||||||||    
T  4688288 ccatacgaaaagcacctaagaaattgtacctaagtt 4688253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 9355652 - 9355584
Alignment:
Q  119 ataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaa 186  Q
    |||||||| | ||||||||||||| |||| || |||||||||||||||||||||||||| |||||||||    
T  9355652 ataacaaattctgagaaaattatggatttaaggaaatcatggtgaatttagttaagaaccatatgaaaa 9355584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 176
Target Start/End: Original strand, 56552108 - 56552191
Alignment:
Q  94 aactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaac 176  Q
    |||||||||||||| |   |||| ||||||||||| |||||||||||| |||||||| |||||||||| |||||| ||||||||    
T  56552108 aactaaaaatacactttccttggttataacaaactttgagaaaattatggatttgaggaaatcatggttaatttatttaagaac 56552191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 186
Target Start/End: Original strand, 2272430 - 2272506
Alignment:
Q  111 ttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaa 186  Q
    ||||||||| |||||||| ||| ||||||||| |||| || |||||||||||||||||| ||||||| ||| |||||    
T  2272430 ttttggatagaacaaactttgataaaattatggatttaaggaaatcatggtgaatttagctaagaaccatacgaaaa 2272506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 43486273 - 43486206
Alignment:
Q  144 tttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    ||||||||||||||||||||||||||||||||| ||| |||||  |   ||||| |||||||||||||    
T  43486273 tttgagaaaatcatggtgaatttagttaagaaccataggaaaagtacctaaggaattgtacctaagtt 43486206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 154
Target Start/End: Original strand, 52824270 - 52824347
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaat 154  Q
    ||||||||  ||| ||||||||||||||| || |||| ||||||| ||||| |||||||||||| |||||||| ||||    
T  52824270 ttttcgtatggttcttaactaaaaatacatattttttagatataataaactttgagaaaattatggatttgaggaaat 52824347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 49)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 45 - 211
Target Start/End: Complemental strand, 3970664 - 3970497
Alignment:
Q  45 aaggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-ga 143  Q
    ||||| |||| |||| || ||||| | ||||| ||||||||  ||| ||||||||||||||| || |||||||||||||||||| |||||||||||| ||    
T  3970664 aaggagaaaacttaggtacaatttcttaggtacttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatgga 3970565  T
Q  144 tttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    ||| || |||||||||||||||||||||||||| ||| ||||| ||   ||||| ||| |||||||||    
T  3970564 tttaaggaaatcatggtgaatttagttaagaaccatacgaaaagcacctaaggaattgcacctaagtt 3970497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 21969297 - 21969163
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||||| || |||||||||||||||||| |||||||||||| ||||| || ||||||||||||||||||||||||||    
T  21969297 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttaaggaaatcatggtgaatttagttaagaac 21969198  T
Q  177 tatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     ||| ||||| ||   ||||| |||||||||||||    
T  21969197 catacgaaaagcacctaaggaattgtacctaagtt 21969163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 21991733 - 21991599
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||||| || |||||||||||||||||| |||||||||||| ||||| || ||||||||||||||||||||||||||    
T  21991733 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttaaggaaatcatggtgaatttagttaagaac 21991634  T
Q  177 tatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     ||| ||||| ||   ||||| |||||||||||||    
T  21991633 catacgaaaagcacctaaggaattgtacctaagtt 21991599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 32237534 - 32237400
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| |||| |||||||||| || |||||||||||||||||| ||||||||||||| || ||||||||||||||| |||||||||||||||    
T  32237534 ttttcgtatggttcttaattaaaaatacatattttttggatataacaaactttgagaaaattatggatctgagaaaatcatggtaaatttagttaagaac 32237435  T
Q  177 tatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     ||| ||||||||   ||||| |||||||||||||    
T  32237434 catacgaaaaacacctaaggaattgtacctaagtt 32237400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 45487830 - 45487964
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||||| || |||||||||||||||||  ||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  45487830 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaacattgagaaaattatgaatttgaggaaatcatggtgaatttagttaagaac 45487929  T
Q  177 tatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     ||| ||||| ||   ||||| |||||||||||||    
T  45487930 catacgaaaagcacctaaggaattgtacctaagtt 45487964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 51 - 208
Target Start/End: Complemental strand, 55340461 - 55340302
Alignment:
Q  51 aaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgtttt-ggatataacaaactatgagaaaattatg-atttga 148  Q
    |||| ||||||| ||||  | ||||||||||| ||  ||| ||||||||||||||| || |||| |||||||||||||| ||||||||||||| ||||||    
T  55340461 aaaacttagatacaattccttaggtatttttcatatggttcttaactaaaaatacatatttttttggatataacaaactttgagaaaattatggatttga 55340362  T
Q  149 gaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaa 208  Q
    |||||||||||||||| ||||||||||  ||| |||||||| | ||| | ||||||||||    
T  55340361 gaaaatcatggtgaatatagttaagaatcatacgaaaaacacataagaaattgtacctaa 55340302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 92 - 189
Target Start/End: Original strand, 12838122 - 12838220
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaactatatgaaaaaca 189  Q
    ||||||||||||||| || |||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||| ||| ||| ||||||||    
T  12838122 ttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaaaaaccatacgaaaaaca 12838220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 26906485 - 26906619
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||| | || |||||||||||||||||| ||||||||||||| ||||||| ||||||| ||||||||||||||||||    
T  26906485 ttttcgtatggttcttaactaaaaatatatattttttggatataacaaactttgagaaaattatgaatttgaggaaatcatagtgaatttagttaagaac 26906584  T
Q  177 tatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     ||| |||||  ||  ||||| |||||||||||||    
T  26906585 catacgaaaagtatctaaggaattgtacctaagtt 26906619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 36278896 - 36278762
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||| | || |||||||||||||||||| ||||||||||||| ||||||| ||||||| ||||||||||||||||||    
T  36278896 ttttcgtatggttcttaactaaaaatatatattttttggatataacaaactttgagaaaattatgaatttgaggaaatcatagtgaatttagttaagaac 36278797  T
Q  177 tatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     ||| |||||  ||  ||||| |||||||||||||    
T  36278796 catacgaaaagtatctaaggaattgtacctaagtt 36278762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 78 - 175
Target Start/End: Original strand, 43150511 - 43150609
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaa 175  Q
    ||||||||  ||||||||||||||||||| || |||||||||||||||||| ||||||||||||| ||||||| ||||||| |||||||||||||||||    
T  43150511 ttttcgtatggtttttaactaaaaatacatattttttggatataacaaactttgagaaaattatgaatttgaggaaatcatagtgaatttagttaagaa 43150609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 51 - 211
Target Start/End: Complemental strand, 13078330 - 13078169
Alignment:
Q  51 aaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgag 149  Q
    |||| |||| || ||||| | ||||| ||||||||   || ||||||||||||||| || |||||||||||||||||| |||||||||||| ||||| ||    
T  13078330 aaaacttaggtacaatttcttaggtacttttcgtatgattcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttaag 13078231  T
Q  150 aaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     |||||||||||||||||||||||||| ||| ||||| ||   ||||| ||| |||||||||    
T  13078230 gaaatcatggtgaatttagttaagaaccatacgaaaagcacctaaggaattgcacctaagtt 13078169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 111 - 211
Target Start/End: Original strand, 35368797 - 35368898
Alignment:
Q  111 ttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaag 209  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||| ||| |||||||| | ||| | |||||||||||    
T  35368797 ttttggatataacaaactttgagaaaattatggatttgagaaaatcatggtgaatttagttaaaaaccatacgaaaaacacataagaaattgtacctaag 35368896  T
Q  210 tt 211  Q
    ||    
T  35368897 tt 35368898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 22101195 - 22101330
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgtt-ttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaa 175  Q
    ||||||||  ||| ||||||||||||||| || || |||||||||||||||| ||||||||||||| ||||||| ||||||| |||||||||||||||||    
T  22101195 ttttcgtatggttcttaactaaaaatacatattttgttggatataacaaactttgagaaaattatggatttgaggaaatcatagtgaatttagttaagaa 22101294  T
Q  176 ctatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    | ||| ||||| |  | ||||| |||||||||||||    
T  22101295 ccatacgaaaagctcataaggaattgtacctaagtt 22101330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 92 - 186
Target Start/End: Complemental strand, 25488467 - 25488372
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaactatatgaaaa 186  Q
    ||||||||||||||| || |||||||||||||||||| |||||||||||| ||| |||  |||||||||||||||||||||||||||||| |||||    
T  25488467 ttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatatgaagaaatcatggtgaatttagttaagaactatacgaaaa 25488372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 92 - 186
Target Start/End: Original strand, 25561056 - 25561151
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaactatatgaaaa 186  Q
    ||||||||||||||| || |||||||||||||||||| |||||||||||| ||| |||  |||||||||||||||||||||||||||||| |||||    
T  25561056 ttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatatgaagaaatcatggtgaatttagttaagaactatacgaaaa 25561151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 25446280 - 25446390
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgtttt-ggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaa 175  Q
    ||||||||  ||| ||||||||||||||| || |||| |||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||    
T  25446280 ttttcgtatggttcttaactaaaaatacatatttttttggatataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaa 25446379  T
Q  176 ctatatgaaaa 186  Q
    | ||| |||||    
T  25446380 ccatacgaaaa 25446390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 72 - 211
Target Start/End: Complemental strand, 4072420 - 4072279
Alignment:
Q  72 aggtatttttcgtagagtttttaactaaaaatacacatgtttt-ggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagt 169  Q
    |||| |||||||||  ||| ||||||||||||||| || |||| |||||||||||||| ||||||||||||| ||| ||| |||||||||||||||||||    
T  4072420 aggtgtttttcgtatggttcttaactaaaaatacatatttttttggatataacaaactttgagaaaattatggattcgaggaaatcatggtgaatttagt 4072321  T
Q  170 taagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    ||||||| ||| ||||| ||   ||| | |||||||||||||    
T  4072320 taagaaccatacgaaaagcacctaagaaattgtacctaagtt 4072279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 72 - 176
Target Start/End: Original strand, 12789631 - 12789736
Alignment:
Q  72 aggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagtt 170  Q
    |||| |||||||||  ||| ||||||||||||||| || |||||||||||||||||| ||| ||||||||| ||||||| ||||||||||||||||| ||    
T  12789631 aggtgtttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttgaaaaaattatgaatttgaggaaatcatggtgaatttaatt 12789730  T
Q  171 aagaac 176  Q
    ||||||    
T  12789731 aagaac 12789736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 51 - 211
Target Start/End: Complemental strand, 36822927 - 36822766
Alignment:
Q  51 aaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgag 149  Q
    |||| |||| || ||||||| ||||  ||||||||  ||| ||||||||||||||| || |||||||||||||||||| |||||||||||| ||| ||||    
T  36822927 aaaacttaggtacaattttttaggtgcttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatctgag 36822828  T
Q  150 aaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     ||||||||||   ||||||||||||| ||| ||||| ||   ||||| |||||||||||||    
T  36822827 gaaatcatggtatttttagttaagaaccatacgaaaagcagctaaggaattgtacctaagtt 36822766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 44611511 - 44611418
Alignment:
Q  88 gtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactata 180  Q
    ||||||||||||||||| | || |||| ||||||||||||| ||||||||||||| ||||||  ||||||||||||||||||||||||||||||    
T  44611511 gtttttaactaaaaatatatatttttttgatataacaaactttgagaaaattatgaatttgaagaaatcatggtgaatttagttaagaactata 44611418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 50099463 - 50099599
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgtttt--ggatataacaaactatgagaaaattatga-tttgagaaaatcatggtgaatttagttaaga 174  Q
    ||||||||  |||||||| |||||||||| || ||||  |||||||||||||| |||||||||||||| |||||| |||| |||||||||||||||||||    
T  50099463 ttttcgtatggtttttaattaaaaatacatattttttttggatataacaaactttgagaaaattatgaatttgaggaaattatggtgaatttagttaaga 50099562  T
Q  175 actatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    || ||| ||||| ||   ||||| |||||||||||||    
T  50099563 accatacgaaaagcacctaaggaattgtacctaagtt 50099599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 22176139 - 22176274
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgtt-ttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaa 175  Q
    ||||||||  ||| ||||||||||||||| || || |||||||| ||||||| ||||||||||||| ||||||| ||||||| |||||||||||||||||    
T  22176139 ttttcgtatggttcttaactaaaaatacatattttgttggatattacaaactttgagaaaattatggatttgaggaaatcatagtgaatttagttaagaa 22176238  T
Q  176 ctatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    | |||  |||| || | ||||| |||||||||||||    
T  22176239 ccatacaaaaagcacataaggaattgtacctaagtt 22176274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 92 - 208
Target Start/End: Original strand, 10254613 - 10254731
Alignment:
Q  92 ttaactaaaaatacacatgtttt-ggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaaca 189  Q
    ||||||||||||||| || |||| |||||||||||||| ||| ||||||||| |||||||||||||||| ||||||||||||||||| ||| ||||| ||    
T  10254613 ttaactaaaaatacatatttttttggatataacaaactttgaaaaaattatggatttgagaaaatcatgatgaatttagttaagaaccatacgaaaagca 10254712  T
Q  190 tacaaggagttgtacctaa 208  Q
       ||||| ||||||||||    
T  10254713 cctaaggaattgtacctaa 10254731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 36657573 - 36657439
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||||| || |||| ||||||||||||| |||||||||||| |||||||| |||||||| |   |||||||||||||    
T  36657573 ttttcgtatggttcttaactaaaaatacatatttttttgatataacaaactttgagaaaattatggatttgaggaaatcatgatatttttagttaagaac 36657474  T
Q  177 tatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     ||| ||||| |||  ||||| |||||||||||||    
T  36657473 catacgaaaagcatctaaggaattgtacctaagtt 36657439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 42 - 143
Target Start/End: Original strand, 46664171 - 46664272
Alignment:
Q  42 aaaaaggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat 141  Q
    |||||||| ||||||||| || ||||| | |||||||||||||| |||| ||||||||||||||| || ||||  |||||||||||| ||||||||||||    
T  46664171 aaaaaggagaaaatttaggtacaatttcttaggtatttttcgtatagttcttaactaaaaatacatatttttttaatataacaaactttgagaaaattat 46664270  T
Q  142 ga 143  Q
    ||    
T  46664271 ga 46664272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 87 - 186
Target Start/End: Complemental strand, 44920777 - 44920677
Alignment:
Q  87 agtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaactatatgaaa 185  Q
    |||| ||||||||||||||| || |||||||||||| ||||| ||||||||||||  ||||||||||||||| || ||||||||||||||| ||| ||||    
T  44920777 agttcttaactaaaaatacatattttttggatataataaactttgagaaaattataaatttgagaaaatcattgtaaatttagttaagaaccataagaaa 44920678  T
Q  186 a 186  Q
    |    
T  44920677 a 44920677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 8831787 - 8831881
Alignment:
Q  94 aactaaaaatacacatgtttt-ggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaa 186  Q
    ||||||||||||| || |||| |||||||||||||| ||||||||||||| ||||||  |||||||||||||||||||||||||| ||| |||||    
T  8831787 aactaaaaatacatatttttttggatataacaaactttgagaaaattatggatttgaagaaatcatggtgaatttagttaagaaccatacgaaaa 8831881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 77 - 169
Target Start/End: Complemental strand, 13724129 - 13724035
Alignment:
Q  77 tttttcgtagagtttttaactaaaaatacacatgtttt-ggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagt 169  Q
    ||||||||| | |||||||||||||||||| || |||| |||||||||||||| ||||||||||||| ||||||  |||||||||||||||||||    
T  13724129 tttttcgtataatttttaactaaaaatacatatttttttggatataacaaactttgagaaaattatgaatttgaagaaatcatggtgaatttagt 13724035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 94 - 175
Target Start/End: Complemental strand, 45713027 - 45712945
Alignment:
Q  94 aactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaa 175  Q
    ||||||||||||| || |||||||||||||||||| ||| |||||||| | |||||| |||||||||||||||||||||||||    
T  45713027 aactaaaaatacatattttttggatataacaaactttgataaaattatggctttgaggaaatcatggtgaatttagttaagaa 45712945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 404086 - 404175
Alignment:
Q  89 tttttaactaaaaatacacatgtttt-ggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaac 176  Q
    |||||||||||||||| | || |||| |||||||||||||| |||||||||||| || ||||| ||||||||||||||||||||||||||    
T  404086 tttttaactaaaaataaatatttttttggatataacaaactttgagaaaattatagacttgaggaaatcatggtgaatttagttaagaac 404175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 89 - 189
Target Start/End: Complemental strand, 46222156 - 46222056
Alignment:
Q  89 tttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatga-tttgagaaaatcatggtgaatttagttaagaactatatgaaaaa 187  Q
    |||||||||||||| |||| | |||||| |||| ||||||| ||||||||||||| ||| ||||||||||||||||||||||||| ||| ||| ||||||    
T  46222156 tttttaactaaaaacacaccttttttggttata-caaactaagagaaaattatgaatttaagaaaatcatggtgaatttagttaaaaaccatacgaaaaa 46222058  T
Q  188 ca 189  Q
    ||    
T  46222057 ca 46222056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 92 - 165
Target Start/End: Original strand, 10017159 - 10017233
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatt 165  Q
    ||||||||||||||| || |||||||||||||||||| ||| |||||||| ||||||||||||||||| ||||||    
T  10017159 ttaactaaaaatacatattttttggatataacaaactttgaaaaaattatggatttgagaaaatcatgatgaatt 10017233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 46 - 211
Target Start/End: Complemental strand, 37506298 - 37506133
Alignment:
Q  46 aggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-at 144  Q
    ||||||||| |||  || |||| || |||| ||||||||   ||| |||||||||||||||  | ||||||| |||||||||| ||||||||||||| ||    
T  37506298 aggacaaaacttatgtacaattctttaggtgtttttcgtgtggttcttaactaaaaatacattttttttggagataacaaactttgagaaaattatgaat 37506199  T
Q  145 ttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    || |||||||||| || ||||||||||||||| |||  |||||||   ||||||||| || ||||||    
T  37506198 ttaagaaaatcat-gtaaatttagttaagaaccatagaaaaaacacttaaggagttgcacttaagtt 37506133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 46679328 - 46679426
Alignment:
Q  114 tggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    ||||| ||||||||| ||||||||||||| ||||||| |||| |||||||||||||||||||||  ||| |||| ||| |||||| |||||| ||||||    
T  46679328 tggatttaacaaactttgagaaaattatggatttgaggaaattatggtgaatttagttaagaaccgtataaaaagcatccaaggaattgtacttaagtt 46679426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 47 - 211
Target Start/End: Complemental strand, 26977013 - 26976848
Alignment:
Q  47 ggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatt 145  Q
    |||||||| |||| || |||| || |||| |||||||||  ||||||||||||||||| |  | |||  |||| || ||||| |||||||||||| ||||    
T  26977013 ggacaaaacttaggtacaattctttaggtgtttttcgtatggtttttaactaaaaatatatctttttacgatacaataaactttgagaaaattatggatt 26976914  T
Q  146 tgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    ||||||||||||  | |||||| |||||||||||| ||||| ||   ||| | |||||||||||||    
T  26976913 tgagaaaatcatactaaatttaattaagaactatacgaaaagcacctaagaaattgtacctaagtt 26976848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 92 - 211
Target Start/End: Complemental strand, 39850471 - 39850350
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaacta-tgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaaca 189  Q
    ||||||||||||| | || ||||||||||||||||||  ||||||||||||| ||||||| ||||||||||   ||||||||||||| ||| ||||||||    
T  39850471 ttaactaaaaatatatattttttggatataacaaacttgtgagaaaattatggatttgaggaaatcatggtatttttagttaagaaccatacgaaaaaca 39850372  T
Q  190 tacaaggagttgtacctaagtt 211  Q
       ||||| | |||||||||||    
T  39850371 cctaaggaatagtacctaagtt 39850350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 92 - 175
Target Start/End: Complemental strand, 10441384 - 10441300
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaa 175  Q
    ||||||||||||||| || |||||||||||||||||| |||||||||||| |||||||| |||||||| |   ||||||||||||    
T  10441384 ttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgaggaaatcatgatatttttagttaagaa 10441300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 92 - 186
Target Start/End: Complemental strand, 42105509 - 42105414
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaa 186  Q
    |||||||||||||||  | |||| || |||||||||| ||||| ||||||| |||| ||||||||| ||||||||||||||||||| ||| |||||    
T  42105509 ttaactaaaaatacaatttttttagagataacaaactttgagagaattatggatttaagaaaatcacggtgaatttagttaagaaccataagaaaa 42105414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 92 - 208
Target Start/End: Original strand, 10117560 - 10117673
Alignment:
Q  92 ttaactaaaaatacacatgtttt-ggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaactatatgaaaaaca 189  Q
    ||||||||||||||| || |||| |||||||||||||| |||||||||||| |||||||||||||     ||||||||||||||||| ||| ||||| ||    
T  10117560 ttaactaaaaatacatatttttttggatataacaaactttgagaaaattatggatttgagaaaat-----tgaatttagttaagaaccatacgaaaagca 10117654  T
Q  190 tacaaggagttgtacctaa 208  Q
       ||||| ||||||||||    
T  10117655 cctaaggaattgtacctaa 10117673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 26977721 - 26977855
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  |||||||||||||||||||  | |||  |||| || ||||| |||||||||||| |||||||| |||||||  | |||||||||||||||    
T  26977721 ttttcgtatggtttttaactaaaaatacatctttttatgatacaataaactttgagaaaattatggatttgaggaaatcatactaaatttagttaagaac 26977820  T
Q  177 tatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     |||||||||  ||  ||| | |||||||||||||    
T  26977821 catatgaaaagtatctaagaaattgtacctaagtt 26977855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 43639188 - 43639123
Alignment:
Q  111 ttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaa 175  Q
    |||||||||||||||||| |||||||||||| |||||||  |||||||||||||||| ||||||||    
T  43639188 ttttggatataacaaactttgagaaaattatggatttgaagaaatcatggtgaatttggttaagaa 43639123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 36329320 - 36329256
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg 142  Q
    ||||||||  ||| ||||||||||||||| || |||||||||||||||||| |||||||||||||    
T  36329320 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatg 36329256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 297644 - 297537
Alignment:
Q  111 ttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaag 209  Q
    ||||| ||||||||||||||||||||||||| ||||| |||||||  | || ||||||| ||||||| ||| ||||| ||   ||||| |||||||||||    
T  297644 ttttgaatataacaaactatgagaaaattatggatttcagaaaattgtagtaaatttagctaagaaccatacgaaaagcaccaaaggaattgtacctaag 297545  T
Q  210 ttattttc 217  Q
    || |||||    
T  297544 tttttttc 297537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 176
Target Start/End: Complemental strand, 39677444 - 39677315
Alignment:
Q  51 aaaatttagatataatttttgaggtatttttcgtaga---gtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatga-ttt 146  Q
    ||||||||| || ||||||| |||| |||||| || |   |||||||| |||||||| | || |||||   |||||||||| ||| |||||||||| |||    
T  39677444 aaaatttaggtacaattttttaggtgtttttcatatactagtttttaattaaaaatatatattttttgtgcataacaaactttgaaaaaattatgaattt 39677345  T
Q  147 gagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||||| ||||||||| ||||||||    
T  39677344 gagaaaatcatagtgaatttaattaagaac 39677315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 211
Target Start/End: Complemental strand, 1476677 - 1476557
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaactatatgaaaaacat 190  Q
    |||||||||||||||  | |||| || |||||||||| ||||| |||||| ||||| || |||||||||||||||||| | ||||| |||  |||| ||     
T  1476677 ttaactaaaaatacaatttttttagagataacaaactttgagagaattatggatttaaggaaatcatggtgaatttaggttagaaccataccaaaagcac 1476578  T
Q  191 acaaggagttgtacctaagtt 211  Q
      ||||| |||||||||||||    
T  1476577 ctaaggaattgtacctaagtt 1476557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 72 - 154
Target Start/End: Complemental strand, 38125325 - 38125242
Alignment:
Q  72 aggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaat 154  Q
    |||| |||||||||  ||| ||||||||||||||| || ||||| |||||||||||| | |||||||||| ||||| |||||||    
T  38125325 aggtgtttttcgtatggttcttaactaaaaatacatattttttgtatataacaaactttaagaaaattatggatttaagaaaat 38125242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 176
Target Start/End: Complemental strand, 157143 - 157009
Alignment:
Q  44 aaaggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttgg-atataacaaactatgagaaaattat- 141  Q
    |||||| |||| ||| ||| ||||| | ||||  |||| ||| |||| ||| ||||||||||| || ||||   |||||||||||| ||||||||||||     
T  157143 aaaggagaaaacttatatacaatttcttaggtgcttttggtatagttcttagctaaaaatacatatttttttttatataacaaactttgagaaaattatg 157044  T
Q  142 gatttgagaaaatcatggtgaatttagttaagaac 176  Q
    |||||||| |||| ||| | |||||||||||||||    
T  157043 gatttgaggaaattatgataaatttagttaagaac 157009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 175
Target Start/End: Original strand, 49984001 - 49984060
Alignment:
Q  117 atataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaa 175  Q
    |||||| ||| | ||| ||||||||| |||| ||||||||||||||||||||||||||||    
T  49984001 atataataaattttgaaaaaattatggatttaagaaaatcatggtgaatttagttaagaa 49984060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 5529922 - 5530032
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgtttt-ggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaa 175  Q
    ||||||||  ||| ||||||||||||||| || |||| ||||||| |||||| |||||||||||| ||||| |  ||||||||||   ||||||||| ||    
T  5529922 ttttcgtatggttcttaactaaaaatacatatttttttggatatatcaaactttgagaaaattatagatttaaagaaatcatggtatttttagttaataa 5530021  T
Q  176 ctatatgaaaa 186  Q
    | ||| |||||    
T  5530022 ccatacgaaaa 5530032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 38 - 211
Target Start/End: Original strand, 8091053 - 8091227
Alignment:
Q  38 tttaaaaaaggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaa 137  Q
    ||||||||| || |||||||||||| ||||  | ||||  ||||||||  ||| ||||||||||||||| || |||||||||||||||||| ||||||||    
T  8091053 tttaaaaaaagagaaaatttagatacaattccttaggtgcttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttgagaaaa 8091152  T
Q  138 ttat-gatttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    |||| ||||| || |||||| ||||||||||||||||||| ||| ||||| ||   ||| | |||||||||||||    
T  8091153 ttatggatttaaggaaatcacggtgaatttagttaagaaccatacgaaaagcacctaagcaattgtacctaagtt 8091227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 21380081 - 21379947
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||||| || |||||||||||||||||  ||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  21380081 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaacattgagaaaattatgaatttgaggaaatcatggtgaatttagttaagaac 21379982  T
Q  177 tatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     ||| ||||| ||   ||||| |||||||||||||    
T  21379981 catacgaaaagcacctaaggaattgtacctaagtt 21379947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 885430 - 885550
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaactatatgaaaaacat 190  Q
    ||||||||||||||| || |||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||  ||| ||||| ||     
T  885430 ttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgagaaaatcatgatgaatttagttaagaatcataggaaaagcac 885529  T
Q  191 acaaggagttgtacctaagtt 211  Q
      ||||| |||||||||||||    
T  885530 ctaaggaattgtacctaagtt 885550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 88 - 211
Target Start/End: Original strand, 7808650 - 7808774
Alignment:
Q  88 gtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaactatatgaaaa 186  Q
    ||||||||||||||||||| || |||||||||||||||||| |||||||||||| |||||||| ||||||||||   ||||||||||||| ||| |||||    
T  7808650 gtttttaactaaaaatacatattttttggatataacaaactttgagaaaattatagatttgaggaaatcatggtatttttagttaagaaccatacgaaaa 7808749  T
Q  187 acatacaaggagttgtacctaagtt 211  Q
     ||   ||||| |||||||||||||    
T  7808750 gcacctaaggaattgtacctaagtt 7808774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 15546677 - 15546797
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaactatatgaaaaacat 190  Q
    ||||||||||||||| || |||||||||||||||||| |||||||||||| |||||||| |||||||||| |||||| |||||||| ||| ||||| ||     
T  15546677 ttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgaggaaatcatggtaaatttaattaagaaccatacgaaaagcac 15546776  T
Q  191 acaaggagttgtacctaagtt 211  Q
      ||||| |||||||||||||    
T  15546777 ctaaggaattgtacctaagtt 15546797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 78 - 189
Target Start/End: Complemental strand, 31764465 - 31764353
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaac 176  Q
    |||||||| |||| ||||||||| ||||| || ||||||||| |||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||    
T  31764465 ttttcgtatagttcttaactaaagatacatattttttggatacaacaaactttgagaaaattatgaatttgagaaaataatggtgaatttagttaagaac 31764366  T
Q  177 tatatgaaaaaca 189  Q
     |||  |||||||    
T  31764365 catacaaaaaaca 31764353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 3369016 - 3369125
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||||| || ||||| |||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||| ||||    
T  3369016 ttttcgtatggttcttaactaaaaatacatattttttgaatataacaaactttgagaaaattatgaatttgaggaaatcatggtgaatttagttaggaac 3369115  T
Q  177 tatatgaaaa 186  Q
     ||| |||||    
T  3369116 gatacgaaaa 3369125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 78 - 189
Target Start/End: Original strand, 13439726 - 13439839
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgtttt-ggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaa 175  Q
    ||||||||  ||| ||| ||||||||||| || |||| |||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||    
T  13439726 ttttcgtatggttcttagctaaaaatacatatttttttggatataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaa 13439825  T
Q  176 ctatatgaaaaaca 189  Q
    | ||| ||||||||    
T  13439826 ccatacgaaaaaca 13439839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 11687283 - 11687149
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||||| || |||| ||||||||||||| |||||||||||| |||||||| |||||||| |   |||||||||||||    
T  11687283 ttttcgtatggttcttaactaaaaatacatatttttttgatataacaaactttgagaaaattatggatttgaggaaatcatgatatttttagttaagaac 11687184  T
Q  177 tatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     ||| ||||| |||  ||||| |||||||||||||    
T  11687183 catacgaaaagcatctaaggaattgtacctaagtt 11687149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 111 - 211
Target Start/End: Original strand, 4238918 - 4239019
Alignment:
Q  111 ttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaag 209  Q
    |||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||| |||||||| |||  |||| || | ||||| |||||||||||    
T  4238918 ttttggatataacaaactttgagaaaattaaggatttgagaaaatcatggtgaatttaattaagaaccatacaaaaagcacagaaggaattgtacctaag 4239017  T
Q  210 tt 211  Q
    ||    
T  4239018 tt 4239019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 4890587 - 4890486
Alignment:
Q  111 ttttggatataacaaactatgagaaaattatga-tttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaag 209  Q
    |||||||||||||||||| |||||||||||||| |||||| |||||||||| ||||||||||||||| ||| ||||||||   ||| | |||||||||||    
T  4890587 ttttggatataacaaactttgagaaaattatgaatttgaggaaatcatggtaaatttagttaagaaccatacgaaaaacacctaagaaattgtacctaag 4890488  T
Q  210 tt 211  Q
    ||    
T  4890487 tt 4890486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 77 - 211
Target Start/End: Complemental strand, 13172714 - 13172580
Alignment:
Q  77 tttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaa 175  Q
    |||||||||  ||| |||| |||||||||| || |||||||||||||||||| |||||||||||| |||||||| |||| ||  ||||||||||||||||    
T  13172714 tttttcgtatggttcttaagtaaaaatacatattttttggatataacaaactttgagaaaattatggatttgaggaaatgat-atgaatttagttaagaa 13172616  T
Q  176 ctatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    | ||| |||||||||  |  || |||||||||||||    
T  13172615 ccatacgaaaaacatctagagaattgtacctaagtt 13172580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 14393628 - 14393694
Alignment:
Q  111 ttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaac 176  Q
    |||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  14393628 ttttggatataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaac 14393694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 29609046 - 29609166
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaactatatgaaaaacat 190  Q
    |||||||||||||||  | ||||||| |||||||||| |||||||||||| ||||| || |||||| ||||||||||||||| ||| ||| ||||| |||    
T  29609046 ttaactaaaaatacatcttttttggagataacaaactttgagaaaattatggatttaaggaaatcacggtgaatttagttaaaaaccatacgaaaagcat 29609145  T
Q  191 acaaggagttgtacctaagtt 211  Q
      ||||| |||||| ||||||    
T  29609146 ctaaggaattgtacgtaagtt 29609166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 18998257 - 18998123
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttg-gatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaa 175  Q
    ||||||||  ||| |||| |||||||||| || ||||  ||||||||||||| ||||||||||||| ||| ||| |||||||||||||||||||||||||    
T  18998257 ttttcgtatggttcttaattaaaaatacatattttttttgatataacaaactttgagaaaattatggattcgaggaaatcatggtgaatttagttaagaa 18998158  T
Q  176 ctatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    |  || ||||||||   ||||| |||||||||||||    
T  18998157 c-gtacgaaaaacacctaaggaattgtacctaagtt 18998123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 72 - 186
Target Start/End: Original strand, 20501731 - 20501846
Alignment:
Q  72 aggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagtt 170  Q
    |||| |||||||||  ||| ||||||||||||||| || ||||||||||||||||||  ||||||||||| |||||||  ||||||||||   |||||||    
T  20501731 aggtgtttttcgtatggttcttaactaaaaatacatattttttggatataacaaacttcgagaaaattatggatttgaagaaatcatggtatttttagtt 20501830  T
Q  171 aagaactatatgaaaa 186  Q
    |||||| ||| |||||    
T  20501831 aagaaccatacgaaaa 20501846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 72 - 180
Target Start/End: Original strand, 17279549 - 17279661
Alignment:
Q  72 aggtatttttcgtagagtttttaactaaaaatacacatgttttggatat---aacaaactatgagaaaattatg-atttgagaaaatcatggtgaattta 167  Q
    ||||||||||||||  ||| |||| |||||||||| || ||||| ||||   |||||||| ||| ||||||||| ||||||  |||||||| ||||||||    
T  17279549 aggtatttttcgtatggttcttaattaaaaatacatattttttgaatataacaacaaactttgataaaattatgaatttgaagaaatcatgatgaattta 17279648  T
Q  168 gttaagaactata 180  Q
    |||||||||||||    
T  17279649 gttaagaactata 17279661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 6433753 - 6433797
Alignment:
Q  142 gatttgagaaaatcatggtgaatttagttaagaactatatgaaaa 186  Q
    |||||||| ||||||| |||||||||||||||||| ||| |||||    
T  6433753 gatttgaggaaatcatagtgaatttagttaagaaccatacgaaaa 6433797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 6e-29; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 67 - 211
Target Start/End: Original strand, 12744846 - 12744991
Alignment:
Q  67 ttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatt 165  Q
    |||| |||| ||||| |||  ||||||||||||||||||| || |||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||    
T  12744846 tttttaggtgttttttgtatggtttttaactaaaaatacatattttttggatataacaaactttgagaaaattatgaatttgaggaaatcatggtgaatt 12744945  T
Q  166 tagttaagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    |||| || ||  ||| ||||||||   ||||| |||||||||||||    
T  12744946 tagtcaaaaatcatacgaaaaacacctaaggaattgtacctaagtt 12744991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 72 - 211
Target Start/End: Complemental strand, 13754437 - 13754297
Alignment:
Q  72 aggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatga-tttgagaaaatcatggtgaatttagtt 170  Q
    |||| |||||||||  ||| ||||||||||||||| || |||| |||||| |||||| |||||||||||||| |||||| |||| |||||||||||||||    
T  13754437 aggtgtttttcgtatggttcttaactaaaaatacatatttttttgatatagcaaactttgagaaaattatgaatttgaggaaattatggtgaatttagtt 13754338  T
Q  171 aagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    |||||  ||| |||||||| | ||||| |||||||||||||    
T  13754337 aagaatcatacgaaaaacacataaggaattgtacctaagtt 13754297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 1138590 - 1138724
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||||| || |||||||||||||||||| |||||||||||| ||||||||||||||||  |||||||||||||||||    
T  1138590 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgagaaaatcataatgaatttagttaagaac 1138689  T
Q  177 tatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     ||| ||||| ||   | ||| |||||||||||||    
T  1138690 catacgaaaagcagctatggaattgtacctaagtt 1138724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 36 - 211
Target Start/End: Original strand, 4265971 - 4266147
Alignment:
Q  36 attttaaaaaaggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaa 135  Q
    |||| ||| ||||| |||| |||| || ||||| | |||| |||||||||  ||| ||||||||||||||| || |||||||| ||||||||| | ||||    
T  4265971 atttaaaataaggagaaaacttaggtacaatttcttaggtgtttttcgtatggttcttaactaaaaatacatattttttggatgtaacaaactttaagaa 4266070  T
Q  136 aattat-gatttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    |||||| |||||||  |||||| ||||||||||||||||||| ||| ||||||||   ||||| ||||||| |||||    
T  4266071 aattatggatttgaagaaatcacggtgaatttagttaagaaccatacgaaaaacacctaaggaattgtaccgaagtt 4266147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 72 - 211
Target Start/End: Original strand, 12807936 - 12808076
Alignment:
Q  72 aggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagtt 170  Q
    |||| |||||||||  ||||||||||||||||||| || |||| ||||||||||||| ||| |||||||| ||||| || |||||||||||||||||||     
T  12807936 aggtgtttttcgtatggtttttaactaaaaatacatattttttagatataacaaactttgaaaaaattatggatttaaggaaatcatggtgaatttagtc 12808035  T
Q  171 aagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    |||||  ||| ||||||||   ||||| |||||||||||||    
T  12808036 aagaatcatacgaaaaacacttaaggaattgtacctaagtt 12808076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 46 - 211
Target Start/End: Complemental strand, 21259902 - 21259736
Alignment:
Q  46 aggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatga-t 144  Q
    |||| ||||||||| || ||||  | ||||| ||||| ||  ||| ||||||||||||||| || |||||||||||||||||| |||||||||||||| |    
T  21259902 aggagaaaatttaggtacaattccttaggtacttttcttatggttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatgatt 21259803  T
Q  145 ttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    ||||| |||||||||||||||||  ||||||| ||| ||||| || | || || |||||| ||||||    
T  21259802 ttgaggaaatcatggtgaatttaactaagaaccatacgaaaagcacataaagaattgtacgtaagtt 21259736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 43 - 208
Target Start/End: Original strand, 43539104 - 43539269
Alignment:
Q  43 aaaaggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat- 141  Q
    ||||||| |||| |||| || ||||| | ||||||||||||||  ||| | ||||| ||||||| || |||||||||||||||||| ||||||||||||     
T  43539104 aaaaggagaaaacttag-tacaatttcttaggtatttttcgtatggttctgaactataaatacatattttttggatataacaaactttgagaaaattatg 43539202  T
Q  142 gatttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaa 208  Q
    ||||| ||||||||| | |||||||||||||| || ||| ||||||||   ||||| ||||||||||    
T  43539203 gatttaagaaaatcacgatgaatttagttaaggaccatacgaaaaacacctaaggaattgtacctaa 43539269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 33629452 - 33629351
Alignment:
Q  111 ttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaag 209  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||| |||  |||| || | ||||| |||||||||||    
T  33629452 ttttggatataacaaactttgagaaaattatggatttgagaaaatcatagtgaatttagttaagaaccataccaaaagcacataaggaattgtacctaag 33629353  T
Q  210 tt 211  Q
    ||    
T  33629352 tt 33629351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 78 - 176
Target Start/End: Original strand, 21261974 - 21262073
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||||| || |||||||||||||||||| |||||||||| | |||||||| |||||||| |||||||||||||||||    
T  21261974 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttgagaaaattgtggatttgaggaaatcatgatgaatttagttaagaac 21262073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 15855874 - 15856008
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||||| || |||| ||||||||||||| |||||||||||| |||||||| |||||||| |   |||||||||||||    
T  15855874 ttttcgtatggttcttaactaaaaatacatatttttttgatataacaaactttgagaaaattatggatttgaggaaatcatgatatttttagttaagaac 15855973  T
Q  177 tatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     ||| ||||| |||  ||||| |||||||||||||    
T  15855974 catacgaaaagcatctaaggaattgtacctaagtt 15856008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 16472986 - 16473120
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||||| || |||| ||||||||||||| |||||||||||| |||||||| |||||||| |   |||||||||||||    
T  16472986 ttttcgtatggttcttaactaaaaatacatatttttttgatataacaaactttgagaaaattatggatttgaggaaatcatgatatttttagttaagaac 16473085  T
Q  177 tatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     ||| ||||| |||  ||||| |||||||||||||    
T  16473086 catacgaaaagcatctaaggaattgtacctaagtt 16473120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 20476462 - 20476596
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||||| || |||  ||||||||||| | ||||||||||||| ||||||| |||||||| |||||||||||||||||    
T  20476462 ttttcgtatggttcttaactaaaaatacatatttttgtgatataacaaattttgagaaaattatggatttgaggaaatcatgatgaatttagttaagaac 20476561  T
Q  177 tatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     ||| ||||| ||   ||||| |||||||||||||    
T  20476562 catacgaaaagcacctaaggaattgtacctaagtt 20476596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 35420752 - 35420618
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||||| || |||| ||||||||||||| |||||||||||| |||||||| |||||||| |   |||||||||||||    
T  35420752 ttttcgtatggttcttaactaaaaatacatatttttttgatataacaaactttgagaaaattatggatttgaggaaatcatgatatttttagttaagaac 35420653  T
Q  177 tatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     ||| ||||| |||  ||||| |||||||||||||    
T  35420652 catacgaaaagcatctaaggaattgtacctaagtt 35420618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 95 - 186
Target Start/End: Complemental strand, 1456145 - 1456053
Alignment:
Q  95 actaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaactatatgaaaa 186  Q
    |||||||||||| || |||||||||||||||||| |||||||||||| ||||||||||||| |  ||||||||||||| |||| |||| ||||    
T  1456145 actaaaaatacatattttttggatataacaaactttgagaaaattatggatttgagaaaattacagtgaatttagttatgaaccatataaaaa 1456053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 78 - 176
Target Start/End: Complemental strand, 24397386 - 24397287
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgtttt-ggatataacaaactatgagaaaattat-gatttgagaaaatcatggtgaatttagttaagaa 175  Q
    ||||||||  ||| ||||||||||||||| || |||| |||||||||||||| |||||||||||| |||||||| ||||||| |||||||||||||||||    
T  24397386 ttttcgtatggttcttaactaaaaatacatatttttttggatataacaaactttgagaaaattatggatttgaggaaatcat-gtgaatttagttaagaa 24397288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 37552431 - 37552349
Alignment:
Q  95 actaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaac 176  Q
    |||||||||||| || |||| | ||||||||||| ||||||||||||| ||||||| || |||||||||||||||||||||||    
T  37552431 actaaaaatacatatttttttgttataacaaactttgagaaaattatgaatttgaggaagtcatggtgaatttagttaagaac 37552349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 37655277 - 37655193
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattatga-tttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||||||||| || |||||  ||||||||||| |||||||||||||| |||||| || |||||||||||||||||||||||    
T  37655277 ttaactaaaaatacatattttttgt-tataacaaactttgagaaaattatgaatttgaggaagtcatggtgaatttagttaagaac 37655193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 32623322 - 32623221
Alignment:
Q  111 ttttggatataacaaactatgagaaaattatgatttgaga-aaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaag 209  Q
    |||| ||||||||||||| |||||||||||||  || | | ||||||| |||||||||||||||||| ||| ||||||||   ||||| |||||||||||    
T  32623322 ttttagatataacaaactttgagaaaattatggatttacagaaatcatagtgaatttagttaagaaccatacgaaaaacacctaaggaattgtacctaag 32623223  T
Q  210 tt 211  Q
    ||    
T  32623222 tt 32623221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 111 - 190
Target Start/End: Original strand, 18236532 - 18236612
Alignment:
Q  111 ttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaacat 190  Q
    |||||||||||||||||| ||| ||||||||| |||| ||||||||| |  |||||||||||||||| ||| |||||||||    
T  18236532 ttttggatataacaaactttgaaaaaattatgtatttaagaaaatcacgacgaatttagttaagaaccatacgaaaaacat 18236612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 45 - 168
Target Start/End: Original strand, 35806933 - 35807057
Alignment:
Q  45 aaggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-ga 143  Q
    ||||||||||||||  || |||| || ||||  ||||| ||  ||| |||||||||||||||  | ||||| |||||||||||| | | |||||||  ||    
T  35806933 aaggacaaaatttaagtacaattctttaggtgcttttcatatggttcttaactaaaaatacatcttttttgaatataacaaactttaaaaaaattaaaga 35807032  T
Q  144 tttgagaaaatcatggtgaatttag 168  Q
    |||||||||||||||||||||||||    
T  35807033 tttgagaaaatcatggtgaatttag 35807057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 171
Target Start/End: Complemental strand, 35276465 - 35276338
Alignment:
Q  46 aggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttg-gatataacaaactatgagaaaattatg-a 143  Q
    ||||||||| ||||||| ||||| | || |  |||| ||| |||| ||| |||||||||||||| ||||  ||||||| ||||| | ||||||||||| |    
T  35276465 aggacaaaacttagatacaatttattagatgctttttgtatagttcttacctaaaaatacacatttttttagatataataaactttaagaaaattatgga 35276366  T
Q  144 tttgagaaaatcatggtgaatttagtta 171  Q
    ||||| ||||||||||| ||||||||||    
T  35276365 tttgataaaatcatggtaaatttagtta 35276338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 89 - 189
Target Start/End: Original strand, 5144470 - 5144570
Alignment:
Q  89 tttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaa 187  Q
    ||||||||||||||||||||| |||||||||||| || ||  |||||||||||| |||| |  |||||||| ||||||||||||| ||  ||| ||||||    
T  5144470 tttttaactaaaaatacacat-ttttggatataataaccttagagaaaattatgaatttaaagaaatcatgatgaatttagttaaaaatcataggaaaaa 5144568  T
Q  188 ca 189  Q
    ||    
T  5144569 ca 5144570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 8364756 - 8364671
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattatga-tttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||||||| |  | |||| || |||||||||| ||||| |||||| | ||| |||||||||||||||||||||||||||||    
T  8364756 ttaactaaaaatataatttttttagacataacaaactttgagagaattataaatttaagaaaatcatggtgaatttagttaagaac 8364671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 61 - 208
Target Start/End: Original strand, 19976275 - 19976424
Alignment:
Q  61 tataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgtttt-ggatataacaaactatgagaaaattat-gatttgagaaaatcatg 158  Q
    |||||||||| | ||  ||||||||  ||| ||||||||||||||  || |||| |||||| | ||||| |||||||||||| |||||||| ||||||||    
T  19976275 tataattttttatgtgattttcgtatggttcttaactaaaaatacgtatttttttggatatgataaactttgagaaaattatggatttgaggaaatcatg 19976374  T
Q  159 gtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaa 208  Q
    || |||||| | || ||||||| ||||| ||   ||||| ||||||||||    
T  19976375 gtaaatttaatcaataactatacgaaaagcacctaaggaattgtacctaa 19976424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 21591300 - 21591219
Alignment:
Q  131 gagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    |||||||||||| ||||||| |||||||||||||||||||| | ||| ||| ||||| ||   ||||| |||||||||||||    
T  21591300 gagaaaattatggatttgaggaaatcatggtgaatttagttcacaaccatacgaaaagcacttaaggaattgtacctaagtt 21591219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 21595417 - 21595336
Alignment:
Q  131 gagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    |||||||||||| ||||||| |||||||||||||||||||| | ||| ||| ||||| ||   ||||| |||||||||||||    
T  21595417 gagaaaattatggatttgaggaaatcatggtgaatttagttcacaaccatacgaaaagcacttaaggaattgtacctaagtt 21595336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 157
Target Start/End: Original strand, 2538443 - 2538507
Alignment:
Q  94 aactaaaaatacacatgttttggatataacaaactatgagaaaattat-gatttgagaaaatcat 157  Q
    |||| ||||||||||| || ||| ||||||||||| |||||||||||| ||||||| ||||||||    
T  2538443 aacttaaaatacacattttctggttataacaaactctgagaaaattatggatttgaaaaaatcat 2538507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 138
Target Start/End: Complemental strand, 42522987 - 42522900
Alignment:
Q  51 aaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaat 138  Q
    |||| ||||||||||||||| |||| ||||| ||   ||| |||||||||||||||  |  ||| ||||||||||||| |||||||||    
T  42522987 aaaacttagatataattttttaggtgttttttgtttggttcttaactaaaaatacatcttatttagatataacaaactttgagaaaat 42522900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 10132359 - 10132419
Alignment:
Q  151 aaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaagtt 211  Q
    ||||| |||||||||||||||||||| |||  ||||||| | ||||| ||||| |||||||    
T  10132359 aaatcgtggtgaatttagttaagaaccatacaaaaaacacataaggaattgtatctaagtt 10132419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0653 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0653
Description:

Target: scaffold0653; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 42 - 176
Target Start/End: Complemental strand, 3569 - 3434
Alignment:
Q  42 aaaaaggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat 141  Q
    |||||||| ||||||||| || |||| || ||||| ||||||||  ||| |||| |||||||||| || |||||||||||||||||| ||| ||||||||    
T  3569 aaaaaggagaaaatttaggtacaattctttaggtacttttcgtatggttcttaaataaaaatacatattttttggatataacaaactttgataaaattat 3470  T
Q  142 -gatttgagaaaatcatggtgaatttagttaagaac 176  Q
      ||||||| ||||||||||||||||| ||||||||    
T  3469 aaatttgaggaaatcatggtgaatttaattaagaac 3434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 94211 - 94309
Alignment:
Q  88 gtttttaactaaaaatacacatgtt--ttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatga 183  Q
    |||||||||||||||||||| | ||  ||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||| ||||||    
T  94211 gtttttaactaaaaatacaccttttcattggatataacaaactatgagaaaattttggatttgataaaatcatggtgaatttagttaagaaccatatga 94309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 51094 - 51228
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaac 176  Q
    ||||||||  ||| ||||||||||||| | || |||||||||||||||||| ||||||||||||| |||| || ||||||| ||||||||||||||||||    
T  51094 ttttcgtatggttcttaactaaaaatatatattttttggatataacaaactttgagaaaattatgaatttaaggaaatcatagtgaatttagttaagaac 51193  T
Q  177 tatatgaaaaacatacaaggagttgtacctaagtt 211  Q
     |||||||||  |   ||||| |||||||||||||    
T  51194 catatgaaaagtacctaaggaattgtacctaagtt 51228  T

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Target: scaffold0188 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 46 - 186
Target Start/End: Original strand, 7085 - 7226
Alignment:
Q  46 aggacaaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattat-gat 144  Q
    |||| ||||||||| || ||||  | |||| |||||||||   || ||||||||||||| | || |||||||||||||||||| |||||||||||| |||    
T  7085 aggagaaaatttaggtacaattccttaggtgtttttcgtatgattcttaactaaaaatatatatattttggatataacaaactttgagaaaattatggat 7184  T
Q  145 ttgagaaaatcatggtgaatttagttaagaactatatgaaaa 186  Q
    ||||| |||||||| ||||||||||||||||| ||| |||||    
T  7185 ttgaggaaatcatgatgaatttagttaagaaccatacgaaaa 7226  T

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Target: scaffold0137 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 51 - 208
Target Start/End: Original strand, 10120 - 10277
Alignment:
Q  51 aaaatttagatataatttttgaggtatttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgag 149  Q
    |||| |||| |||||||  | |||| |||| ||||  ||| ||||||||||||| | || |||||||||||||||||| ||||||||||||| || ||||    
T  10120 aaaacttaggtataattccttaggtgttttgcgtatggttcttaactaaaaatatatat-ttttggatataacaaactttgagaaaattatggatgtgag 10218  T
Q  150 aaaatcatggtgaatttagttaagaactatatgaaaaacatacaaggagttgtacctaa 208  Q
    |||||||||||||||||| ||||||| |||| ||||| || | ||| | ||||||||||    
T  10219 aaaatcatggtgaatttacttaagaattatacgaaaagcacataagaaattgtacctaa 10277  T

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Target: scaffold0118 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 14487 - 14607
Alignment:
Q  92 ttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaactatatgaaaaacat 190  Q
    ||||||||||||||| ||  ||||||||||||| ||| ||||||||||||| || |||  || | ||||||||||||||||||||| ||| ||||| ||     
T  14487 ttaactaaaaatacatattatttggatataacagactttgagaaaattatggatatgacgaagtaatggtgaatttagttaagaacgatacgaaaagcac 14586  T
Q  191 acaaggagttgtacctaagtt 211  Q
     |||||| |||||||||||||    
T  14587 ccaaggaattgtacctaagtt 14607  T

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Target: scaffold0006 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 72411 - 72347
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatg 142  Q
    ||||||||  ||||||||||||||||||| || |||||||||||||||||| |||||||||||||    
T  72411 ttttcgtatggtttttaactaaaaatacatattttttggatataacaaactctgagaaaattatg 72347  T

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Target: scaffold0163 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 2046 - 1980
Alignment:
Q  111 ttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaac 176  Q
    |||| ||||||||||||| || |||||||||| ||||||| ||||||||||||||||||||||||||    
T  2046 ttttagatataacaaactttgtgaaaattatggatttgaggaaatcatggtgaatttagttaagaac 1980  T

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Target: scaffold0595 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 5801 - 5845
Alignment:
Q  142 gatttgagaaaatcatggtgaatttagttaagaactatatgaaaa 186  Q
    |||||||| |||||||||||||||||||||||||| ||| |||||    
T  5801 gatttgaggaaatcatggtgaatttagttaagaaccatacgaaaa 5845  T

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Target: scaffold0595; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 5732 - 5780
Alignment:
Q  78 ttttcgtagagtttttaactaaaaatacacatgttttggatataacaaa 126  Q
    ||||||||  ||| ||||||||||||||| || ||||||||||||||||    
T  5732 ttttcgtatggttcttaactaaaaatacatattttttggatataacaaa 5780  T

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Target: scaffold0391 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 144
Target Start/End: Complemental strand, 3755 - 3659
Alignment:
Q  49 acaaaatttagatataatttttgaggtatttttcgtagag-tttttaactaaaaatacacatgttttggatataacaaactatgagaaaattatgat 144  Q
    |||||| |||||||||||| || |||| |||||| ||  | ||||||| ||||||||   || ||||  ||||||||||||||||||||||||||||    
T  3755 acaaaacttagatataattctttaggtgtttttcataatgatttttaattaaaaatatttattttttttatataacaaactatgagaaaattatgat 3659  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 138384 - 138319
Alignment:
Q  111 ttttggatataacaaactatgagaaaattatg-atttgagaaaatcatggtgaatttagttaagaa 175  Q
    |||||||||||| ||||| | | |||| |||| |||| ||||||||||| ||||||||||||||||    
T  138384 ttttggatataataaactttaaaaaaaatatggatttaagaaaatcatgatgaatttagttaagaa 138319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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