View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_high_20 (Length: 504)
Name: NF4445_high_20
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 2e-72; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 162 - 324
Target Start/End: Complemental strand, 35613446 - 35613284
Alignment:
| Q |
162 |
actaaaatatctatacctaaaaatgacagaaataaaacaagaaagcatttgaaaattttcaacgttttattagtttccaaatcagtttcacttcaacgta |
261 |
Q |
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| T |
35613446 |
actaaaatatctatacctaaaaatgacagaaataaatcaagaaagcatttgaaaattttcaacgttttattcgtttccaaatcagtttcacttcaaggta |
35613347 |
T |
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| Q |
262 |
aaattaaaatagtgtaggtacatataatatatgtgcatggttagcactaattaaagtatttat |
324 |
Q |
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| T |
35613346 |
aaattaaaatagtgtaggtgcatataatatatgtgcatgcttagcattaattaaagtatttat |
35613284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 35613556 - 35613430
Alignment:
| Q |
17 |
aattcattcactcatttatgggatgggaca----tgcatccatcctttatttaaccattcaccttcctctccacaacattgactgcatgctacaaatagt |
112 |
Q |
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| T |
35613556 |
aattcattcactcatttatgggatgggacaacattgctgccatcctttatttaaccattcaccttcctctccacaacattgactgcatgctacaaatagt |
35613457 |
T |
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| Q |
113 |
ggttgaagccattaaaatatctatacc |
139 |
Q |
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| T |
35613456 |
ggttgaagccactaaaatatctatacc |
35613430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 373 - 436
Target Start/End: Complemental strand, 35613286 - 35613223
Alignment:
| Q |
373 |
tatatcttcattcgggttcgagttatgtgcatttctgatggtgtttgtcacttcatctatagac |
436 |
Q |
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| T |
35613286 |
tatatcttcattcgggttcgagttatgtgcatttctgatggtgtttgtcgcttcatctatagac |
35613223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 450 - 495
Target Start/End: Complemental strand, 35612910 - 35612865
Alignment:
| Q |
450 |
tttgatctaatatgatcccaaggtatatccacgtcctagacctttg |
495 |
Q |
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| T |
35612910 |
tttgatctaatatgatcccaaggtatatccacgtcctagacctttg |
35612865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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