View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_high_24 (Length: 458)
Name: NF4445_high_24
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 48567595 - 48567985
Alignment:
| Q |
1 |
tctctacccatgttccaccaaagaaaacattataattcaatgttagattatcccaatatcatctatcttatctcttatctattacagatttgtgtactat |
100 |
Q |
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|||||| || || ||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
48567595 |
tctctatccctgatccaccaaagaaaacattataattcaatgttcgattattccaatatcatccatcttatctcttatctattacagatttgtgtactat |
48567694 |
T |
|
| Q |
101 |
caaaaaatgtatggaggattacttaaagtcaactcgttggttcttgtgattcaactttgaatttccactttgatgtctggtagtattaannnnnnnnatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
48567695 |
caaaaaatgtatggaggattacttaaagtcaactcgttggttcttgtgattcaactttgaatttccactttgatgtctggtagtattaatttttttaatc |
48567794 |
T |
|
| Q |
201 |
gtacttcgtcttggttgcctatttaattatttcatgaatctatttgtataaaacaatgcccagtagtactagttttactgtttttgcaagtttttcatgt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
48567795 |
gtacttcgtcttggttgcctatttaattatttcatgactctatttgtataaaacaatgcccagtagtactagttttactatttttgcaagtttttcatgt |
48567894 |
T |
|
| Q |
301 |
gcacctcacgtattgaaatatnnnnnnnnnnnnnnnnnnnttgagaaatcaatattcgatatacatttttttcttcttctatgtcaaatcaaac |
394 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
48567895 |
gcacctcacgtattgaaatat---aaaaaaaaaaaaaaaattgagaaatcaatattcgatatacatttttttcttctcctatgtcaaatcaaac |
48567985 |
T |
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