View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4445_high_29 (Length: 404)
Name: NF4445_high_29
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_high_29 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 20 - 394
Target Start/End: Complemental strand, 6033754 - 6033380
Alignment:
| Q |
20 |
taagcttcgcaacagcagcagtcttatcaggcggacatttcgagattgaaacattgaaacaccgcagagcttcatccaacttcccaccagccaaagcagc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6033754 |
taagcttcgcaacagcagcagtcttatcaggcggacatttcgagatcgaaacattgaaacaccgcagagcttcatccaacttcccaccagccaaagcagc |
6033655 |
T |
|
| Q |
120 |
gcaacccgctctgtacgattcgtcagccgtgcgtgcgtcgtgtaattgatcggcgtcgagcgtggcggtggcgcgtgtatattccagattcgaaattgct |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6033654 |
gcaacccgctctgtacgattcgtcagccgtgcgtgcgtcgtgtaattgttcggcgtcgagcgtggcggtggcgcgtgtatattccagattcgaaattgct |
6033555 |
T |
|
| Q |
220 |
gaatcaatttctgacatcagagcttctggtgttgcagcgattatctttacgccgtcgtatacgctccaatggatcttccctcgttctaccgaacccatga |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6033554 |
gaatcaatttctgacatcagagcttctggtgttgcagcgattatctttacgccgtcgtatacgctccaatggatcttccctcgttctaccgaacccatga |
6033455 |
T |
|
| Q |
320 |
tgattaatttggttgttgaagaatgttgttatttctttctatttagattagctcattccttttcttttcattcat |
394 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6033454 |
tgattaatttggttgttgaagaacgttgttatttctttctatttagattagctcattccttttcttttcattcat |
6033380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University