View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4445_high_3 (Length: 798)

Name: NF4445_high_3
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4445_high_3
NF4445_high_3
[»] chr3 (9 HSPs)
chr3 (311-797)||(55449257-55449743)
chr3 (9-225)||(55448955-55449171)
chr3 (313-395)||(29563546-29563628)
chr3 (323-395)||(21523722-21523794)
chr3 (314-408)||(11836809-11836903)
chr3 (322-408)||(52426414-52426500)
chr3 (335-388)||(9503959-9504012)
chr3 (318-395)||(29719752-29719829)
chr3 (318-395)||(33458528-33458605)
[»] chr4 (8 HSPs)
chr4 (324-408)||(36706374-36706458)
chr4 (313-420)||(4576583-4576690)
chr4 (325-395)||(6892933-6893003)
chr4 (313-395)||(11432352-11432434)
chr4 (314-408)||(26660237-26660331)
chr4 (314-408)||(6828937-6829030)
chr4 (323-395)||(32519856-32519929)
chr4 (323-395)||(22320104-22320176)
[»] chr8 (20 HSPs)
chr8 (313-395)||(2510590-2510672)
chr8 (323-388)||(10710024-10710089)
chr8 (323-420)||(22738702-22738801)
chr8 (318-395)||(2620093-2620170)
chr8 (323-395)||(40691292-40691364)
chr8 (318-388)||(25107296-25107366)
chr8 (317-395)||(35458908-35458986)
chr8 (335-395)||(31587849-31587909)
chr8 (318-385)||(9617434-9617501)
chr8 (313-395)||(38995989-38996071)
chr8 (313-395)||(44602011-44602093)
chr8 (325-395)||(44652475-44652545)
chr8 (323-395)||(2062548-2062620)
chr8 (327-395)||(39628724-39628792)
chr8 (327-395)||(39638274-39638342)
chr8 (325-408)||(255031-255114)
chr8 (325-408)||(846542-846625)
chr8 (325-395)||(660806-660876)
chr8 (335-388)||(10812028-10812081)
chr8 (323-395)||(39139473-39139546)
[»] chr5 (12 HSPs)
chr5 (323-395)||(42108646-42108718)
chr5 (318-395)||(38876753-38876830)
chr5 (318-395)||(19297980-19298057)
chr5 (326-395)||(40514896-40514965)
chr5 (313-395)||(6391357-6391439)
chr5 (314-408)||(22859570-22859664)
chr5 (314-408)||(15897921-15898014)
chr5 (324-395)||(40201751-40201824)
chr5 (325-374)||(11873606-11873655)
chr5 (335-388)||(14830730-14830783)
chr5 (362-395)||(15230860-15230893)
chr5 (335-388)||(16885585-16885638)
[»] chr7 (9 HSPs)
chr7 (323-395)||(32420482-32420554)
chr7 (335-398)||(42672886-42672949)
chr7 (323-395)||(25685422-25685494)
chr7 (313-376)||(9271296-9271359)
chr7 (325-395)||(18330704-18330774)
chr7 (317-395)||(32684360-32684438)
chr7 (313-387)||(42766494-42766568)
chr7 (325-394)||(25072816-25072884)
chr7 (313-395)||(41015710-41015794)
[»] chr1 (13 HSPs)
chr1 (313-389)||(51370349-51370425)
chr1 (313-395)||(4362326-4362408)
chr1 (314-408)||(22863362-22863456)
chr1 (313-395)||(35718551-35718633)
chr1 (318-395)||(30562398-30562475)
chr1 (326-406)||(3532785-3532865)
chr1 (344-408)||(4402128-4402192)
chr1 (316-420)||(1825088-1825194)
chr1 (325-395)||(3022728-3022799)
chr1 (325-420)||(6136059-6136154)
chr1 (313-395)||(27089824-27089906)
chr1 (335-388)||(25412210-25412263)
chr1 (326-395)||(45621527-45621596)
[»] chr6 (5 HSPs)
chr6 (314-420)||(10667666-10667773)
chr6 (313-395)||(6228048-6228130)
chr6 (313-395)||(13640929-13641011)
chr6 (313-395)||(33248188-33248270)
chr6 (318-395)||(6248720-6248797)
[»] chr2 (11 HSPs)
chr2 (313-395)||(13560081-13560163)
chr2 (314-408)||(39848422-39848516)
chr2 (327-395)||(10057357-10057425)
chr2 (322-408)||(5712454-5712540)
chr2 (313-421)||(16055069-16055180)
chr2 (325-385)||(30992453-30992512)
chr2 (324-395)||(9730266-9730336)
chr2 (314-408)||(16202001-16202098)
chr2 (313-388)||(40629305-40629380)
chr2 (313-395)||(43898202-43898285)
chr2 (335-388)||(9716199-9716252)
[»] scaffold0373 (1 HSPs)
scaffold0373 (314-408)||(7390-7483)
[»] scaffold0330 (1 HSPs)
scaffold0330 (313-420)||(10867-10973)


Alignment Details
Target: chr3 (Bit Score: 475; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 311 - 797
Target Start/End: Original strand, 55449257 - 55449743
Alignment:
Q  311 gctaaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatataaa 410  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55449257 gctaacctttttagtaatttaaacttattactctacattaattattttcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatataaa 55449356  T
Q  411 gtcagatttctaaaataaaatgtcatgtttaatatcaaaatgaagtttaacttaattgatcaattgattcgttagtctgtttaaacatatgtttgattgc 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55449357 gtcagatttctaaaataaaatgtcatgtttaatatcaaaatgaagtttaacttaattgatcaattgattcgttagtctgtttaaacatatgtttgattgc 55449456  T
Q  511 ttaattaaaaatattcataggaaattggtctttaagttagctaacatgccataccaatgtttcaaaatgaccagattgcttatttgtacaagtgtagtac 610  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55449457 ttaattaaaaatgttcataggaaattggtctttaagttagctaacatgccataccaatgtttcaaaatgaccagattgcttatttgtacaagtgtagtac 55449556  T
Q  611 aaataactggctacaaaattgactgttattgctgaggtaaattgactgttatatctgaagcacattgtatagtgtttctttttaaccttattaaagcaaa 710  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55449557 aaataactggctacaaaattgactgttattgctgaggtaaattgactgttatatctgaagcacattgtatagtgtttctttttaaccttattaaagcaaa 55449656  T
Q  711 ttctaaacttctcttctcaagctgtcacacctcagtctaagaagatattcttgagttcaaaaaccataggtggtgtagcgttagacc 797  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55449657 ttctaaacttctcttctcaagctgtcacacctcagtctaagaagatattcttgagttcaaaaaccataggtggtgtagcgttagacc 55449743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 55448955 - 55449171
Alignment:
Q  9 agctgctgtctctgtcattaatttcattcttgggtaggtaggggtggccgggtgggtataaactagggtacatgtttgatagtctaggctatgtcggtca 108  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  55448955 agctgctgtctctgtcattcatttcattcttgggtaggtaggggtggccgggtgggtataagccagggtacatgtttgatagtctaggctatgtcggtca 55449054  T
Q  109 ccagattttttaaaaatagacaacgtgtagactttttggtagcctatttagctaaaaaagtcaggctacatgccataaatgaagcctttcaggccgagct 208  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  55449055 ccagattttttaaaaatagacaacgcgtagactttttggtagcctatttagctaaaaaagtcaggctacatgccataaatgaagcctttcaagccgagct 55449154  T
Q  209 acttaagtacggataac 225  Q
    |||||||||||||||||    
T  55449155 acttaagtacggataac 55449171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 313 - 395
Target Start/End: Original strand, 29563546 - 29563628
Alignment:
Q  313 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||| |||| |||||||||| ||||||| | |||||||||| | |||| ||||||||||||||| ||||||||||| ||||||    
T  29563546 taactttttcagtaatttaagcttattagtatacattaattttatgcatatttaaatgtattattataaactagaattgaaat 29563628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 323 - 395
Target Start/End: Original strand, 21523722 - 21523794
Alignment:
Q  323 agtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||||||||| |||||||  ||||||||||| |||||| ||||| ||||||||| |||||||| || ||||||    
T  21523722 agtaatttaagcttattagcctacattaattttttgcatatttatatgtattattataaactaaaattgaaat 21523794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 314 - 408
Target Start/End: Original strand, 11836809 - 11836903
Alignment:
Q  314 aaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatata 408  Q
    ||||||| || |||||||| ||||||| | ||||||| || |  ||| ||||||||||||||| ||||| ||||| |||||| || ||| |||||    
T  11836809 aacctttaaattaatttaagcttattagtttacattatttttccgcatatttaaatgtattattataaattagaattgaaatatgatataatata 11836903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 322 - 408
Target Start/End: Complemental strand, 52426500 - 52426414
Alignment:
Q  322 aagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatata 408  Q
    ||||||||||| ||||||| | || |||| || || ||| ||||||||||||||| ||||| ||||| |||||| || ||| |||||    
T  52426500 aagtaatttaagcttattagtttatattattttttcgcatatttaaatgtattattataaattagaattgaaatatgatataatata 52426414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 335 - 388
Target Start/End: Complemental strand, 9504012 - 9503959
Alignment:
Q  335 ttattactctacattaattatttgcacatttaaatgtattatgataaactagaa 388  Q
    |||||| | |||||||||| |||||| || |||||||||||| |||||||||||    
T  9504012 ttattagtatacattaattttttgcatatataaatgtattattataaactagaa 9503959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 395
Target Start/End: Complemental strand, 29719829 - 29719752
Alignment:
Q  318 ttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||| ||||||||||  ||||||   || ||||||| ||| |||||||||||||||||| | ||||||||| ||||||    
T  29719829 tttttagtaatttaagtttattagcatagattaattttttacacatttaaatgtattattacaaactagaattgaaat 29719752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 395
Target Start/End: Original strand, 33458528 - 33458605
Alignment:
Q  318 ttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||| |||||||||  ||||||| | || |||||||  | ||| ||||||||||||||| ||||||||||| ||||||    
T  33458528 tttttagtaatttatgcttattagtatatattaatttctcgcatatttaaatgtattattataaactagaattgaaat 33458605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 324 - 408
Target Start/End: Complemental strand, 36706458 - 36706374
Alignment:
Q  324 gtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatata 408  Q
    ||||||||||||||||| |||||||||||| ||| || ||||||||||||||| ||||| ||||| |||||| || |||||||||    
T  36706458 gtaatttaaacttattagtctacattaatttttttcaaatttaaatgtattattataaagtagaattgaaatatgatatcatata 36706374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 313 - 420
Target Start/End: Original strand, 4576583 - 4576690
Alignment:
Q  313 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatataaagt 412  Q
    |||| |||| |||||||||| ||||||| | || ||||||| |||||| |||||||| |||||| ||||||||||| |||||| || ||| ||||| |||    
T  4576583 taacttttttagtaatttaagcttattagtatatattaattttttgcatatttaaatttattattataaactagaattgaaatatgatataatatatagt 4576682  T
Q  413 cagatttc 420  Q
    || |||||    
T  4576683 caaatttc 4576690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 325 - 395
Target Start/End: Original strand, 6892933 - 6893003
Alignment:
Q  325 taatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||||||| ||||||| | |||||||||  |||||| ||||||||||||||| ||||||||||| ||||||    
T  6892933 taatttaagcttattagtatacattaatgttttgcatatttaaatgtattattataaactagaattgaaat 6893003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 313 - 395
Target Start/End: Original strand, 11432352 - 11432434
Alignment:
Q  313 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||| |||| |||||||||| |||| || | |||||||||| |||||| |||||||||||||||  |||||||||| ||||||    
T  11432352 taactttttcagtaatttaagcttactaatatacattaattttttgcatatttaaatgtattattgtaaactagaattgaaat 11432434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 314 - 408
Target Start/End: Complemental strand, 26660331 - 26660237
Alignment:
Q  314 aaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatata 408  Q
    ||||||| ||||||||||| ||||||| | ||||||| || |||||| ||||||||||||||| ||||| || || |||||| || ||| |||||    
T  26660331 aacctttaaagtaatttaagcttattagtttacattatttttttgcatatttaaatgtattattataaattataattgaaatatgatataatata 26660237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 314 - 408
Target Start/End: Original strand, 6828937 - 6829030
Alignment:
Q  314 aaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatata 408  Q
    ||||||| ||||||||||| ||||||| | ||||||| || || ||| ||||||||||||||| ||||| ||||| |||||| || ||| |||||    
T  6828937 aacctttaaagtaatttaagcttattagtttacattattt-ttcgcatatttaaatgtattattataaattagaattgaaatatgatataatata 6829030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 323 - 395
Target Start/End: Complemental strand, 32519929 - 32519856
Alignment:
Q  323 agtaatttaaacttattactctacattaattattt-gcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||||||||| ||||||| | ||||||| || ||| ||||||||||||||||||| |||||||| || ||||||    
T  32519929 agtaatttaagcttattagtatacattattttttttgcacatttaaatgtattattataaactataattgaaat 32519856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 323 - 395
Target Start/End: Complemental strand, 22320176 - 22320104
Alignment:
Q  323 agtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||||||||| | ||||| |||||||||||| |||||| ||||| || |||||  ||||||||||| ||||||    
T  22320176 agtaatttaagcatattagtctacattaattttttgcatatttatatatattactataaactagaattgaaat 22320104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 313 - 395
Target Start/End: Complemental strand, 2510672 - 2510590
Alignment:
Q  313 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||| |||| |||||||||| ||||||| | |||||||||| |||||| ||||||||||||||| ||||||||||| ||||||    
T  2510672 taactttttcagtaatttaagcttattagtatacattaattttttgcatatttaaatgtattattataaactagaattgaaat 2510590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 323 - 388
Target Start/End: Original strand, 10710024 - 10710089
Alignment:
Q  323 agtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaa 388  Q
    |||||||| ||||||||| | |||||||||| |||||||||||||||||||||| |||||||||||    
T  10710024 agtaatttgaacttattagtatacattaattttttgcacatttaaatgtattattataaactagaa 10710089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 323 - 420
Target Start/End: Complemental strand, 22738801 - 22738702
Alignment:
Q  323 agtaatttaaacttattactctacattaattattt--gcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatataaagtcagatttc 420  Q
    |||||||||||||||||| | |||||||||| |||  ||| ||||||||||||||| ||||||||||| |||||| || ||| ||||| ||||| |||||    
T  22738801 agtaatttaaacttattagtatacattaattttttttgcatatttaaatgtattattataaactagaattgaaatatggtataatatatagtcaaatttc 22738702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 318 - 395
Target Start/End: Original strand, 2620093 - 2620170
Alignment:
Q  318 ttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||| |||||||||| ||||||| | |||||| ||| |||||| ||||||||||||||| ||||||||||| ||||||    
T  2620093 ttttcagtaatttaagcttattagtatacatttattttttgcatatttaaatgtattattataaactagaattgaaat 2620170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 323 - 395
Target Start/End: Complemental strand, 40691364 - 40691292
Alignment:
Q  323 agtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||||||||| ||||||| |||||||||||  |||||| ||||| ||||||||| ||||||||||| ||||||    
T  40691364 agtaatttaagcttattagtctacattaatattttgcatatttatatgtattattataaactagaattgaaat 40691292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 318 - 388
Target Start/End: Original strand, 25107296 - 25107366
Alignment:
Q  318 ttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaa 388  Q
    |||| ||||||||||  |||||| | |||||||||| |||||| ||||||||||||||| |||||||||||    
T  25107296 ttttcagtaatttaagtttattagtatacattaattttttgcatatttaaatgtattattataaactagaa 25107366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 317 - 395
Target Start/End: Complemental strand, 35458986 - 35458908
Alignment:
Q  317 cttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||| ||||||||||||||||||| | ||||||| || || ||| ||||||||||||||| ||||| ||||| ||||||    
T  35458986 ctttaaagtaatttaaacttattagtgtacattattttttcgcatatttaaatgtattattataaattagaattgaaat 35458908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 335 - 395
Target Start/End: Original strand, 31587849 - 31587909
Alignment:
Q  335 ttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||||| |||||||||||| |||||| ||||| ||||||||| ||||||||||| ||||||    
T  31587849 ttattagtctacattaattttttgcatatttatatgtattattataaactagaattgaaat 31587909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 318 - 385
Target Start/End: Complemental strand, 9617501 - 9617434
Alignment:
Q  318 ttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaacta 385  Q
    |||| |||||||||| ||||||| | |||||||| | |||||| ||||||||||||||| ||||||||    
T  9617501 tttttagtaatttaagcttattagtatacattaactttttgcatatttaaatgtattattataaacta 9617434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 313 - 395
Target Start/End: Original strand, 38995989 - 38996071
Alignment:
Q  313 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||| |||| |||| ||||| ||||||| | | |||||||| |||||| || |||||||||||| ||||||||||| ||||||    
T  38995989 taactttttcagtattttaagcttattagtatgcattaattttttgcatatataaatgtattattataaactagaattgaaat 38996071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 313 - 395
Target Start/End: Original strand, 44602011 - 44602093
Alignment:
Q  313 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||| |||| |||| ||||| ||||||| | | |||||||| |||||| || |||||||||||| ||||||||||| ||||||    
T  44602011 taactttttcagtattttaagcttattagtatgcattaattttttgcatatataaatgtattattataaactagaattgaaat 44602093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 325 - 395
Target Start/End: Original strand, 44652475 - 44652545
Alignment:
Q  325 taatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||||||||||||||| | | |||||||  |||||| ||||||||| ||||| ||||||||||| ||||||    
T  44652475 taatttaaacttattagtatgcattaatcttttgcatatttaaatgcattattataaactagaattgaaat 44652545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 323 - 395
Target Start/End: Original strand, 2062548 - 2062620
Alignment:
Q  323 agtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||||||||| ||||||| | |||||||||| |||||| ||||||||||| ||| | |||||| || ||||||    
T  2062548 agtaatttaagcttattagtatacattaattttttgcatatttaaatgtactattacaaactataattgaaat 2062620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 327 - 395
Target Start/End: Original strand, 39628724 - 39628792
Alignment:
Q  327 atttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||||| ||||||| | |||||||||| || ||| || |||||||||||| ||||||||||| ||||||    
T  39628724 atttaagcttattagtatacattaatttttcgcatatataaatgtattattataaactagaattgaaat 39628792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 327 - 395
Target Start/End: Original strand, 39638274 - 39638342
Alignment:
Q  327 atttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||||| ||||||| | |||||||||| || ||| || |||||||||||| ||||||||||| ||||||    
T  39638274 atttaagcttattagtatacattaatttttcgcatatataaatgtattattataaactagaattgaaat 39638342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 325 - 408
Target Start/End: Complemental strand, 255114 - 255031
Alignment:
Q  325 taatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatata 408  Q
    |||||||| ||||||| | |||||||||| || ||| || |||||||||||| |||||||| || |||||| || ||| |||||    
T  255114 taatttaagcttattagtatacattaatttttcgcatatataaatgtattattataaactataactgaaatatgatataatata 255031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 325 - 408
Target Start/End: Original strand, 846542 - 846625
Alignment:
Q  325 taatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatata 408  Q
    |||||||| ||||||| | |||||||||| || ||| || |||||||||||| |||||||| || |||||| || ||| |||||    
T  846542 taatttaagcttattagtatacattaatttttcgcatatataaatgtattattataaactataactgaaatatgatataatata 846625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 325 - 395
Target Start/End: Original strand, 660806 - 660876
Alignment:
Q  325 taatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||||||| ||||||| | |||||||||| || ||| || |||||||||||| |||||||| || ||||||    
T  660806 taatttaagcttattagtatacattaatttttcgcatatataaatgtattattataaactataactgaaat 660876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 335 - 388
Target Start/End: Complemental strand, 10812081 - 10812028
Alignment:
Q  335 ttattactctacattaattatttgcacatttaaatgtattatgataaactagaa 388  Q
    |||||| | |||||||||| |||||| || |||||||||||| |||||||||||    
T  10812081 ttattagtatacattaattttttgcatatataaatgtattattataaactagaa 10812028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 323 - 395
Target Start/End: Complemental strand, 39139546 - 39139473
Alignment:
Q  323 agtaatttaaacttattactctacattaattattt-gcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    ||||||||||  |||||| |||||||||||| ||| ||| ||||| || |||||| ||||||||||| ||||||    
T  39139546 agtaatttaagtttattagtctacattaatttttttgcatatttatatttattattataaactagaattgaaat 39139473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 323 - 395
Target Start/End: Complemental strand, 42108718 - 42108646
Alignment:
Q  323 agtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||||||||| ||||||| |||||||||||| |||||| ||||| ||||||||| ||||||||||| ||||||    
T  42108718 agtaatttaagcttattaatctacattaattttttgcatatttatatgtattattataaactagaattgaaat 42108646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 318 - 395
Target Start/End: Complemental strand, 38876830 - 38876753
Alignment:
Q  318 ttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||| |||||||| ||||||||| | |||||||||| |||| | ||||||||||||||| ||||||||||| ||||||    
T  38876830 tttttagtaatttcaacttattaatatacattaattttttgtatatttaaatgtattattataaactagaattgaaat 38876753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 318 - 395
Target Start/End: Original strand, 19297980 - 19298057
Alignment:
Q  318 ttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||| |||||||||| ||||||| | |||||||| | |||||| || |||||||||||| ||||||||||| ||||||    
T  19297980 ttttcagtaatttaagcttattagtatacattaactttttgcatatataaatgtattattataaactagaattgaaat 19298057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 326 - 395
Target Start/End: Complemental strand, 40514965 - 40514896
Alignment:
Q  326 aatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    ||||||| ||| ||| | |||||||||| |||||| ||||||||||||||| ||||||||||| ||||||    
T  40514965 aatttaagcttgttagtgtacattaattttttgcatatttaaatgtattattataaactagaattgaaat 40514896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 313 - 395
Target Start/End: Original strand, 6391357 - 6391439
Alignment:
Q  313 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||| |||| |||||||||| ||||||| | | |||||||| |||| | ||||||||||||||  ||||||||||| ||||||    
T  6391357 taactttttcagtaatttaagcttattaatatgcattaattttttgtatatttaaatgtattactataaactagaattgaaat 6391439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 314 - 408
Target Start/End: Original strand, 22859570 - 22859664
Alignment:
Q  314 aaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatata 408  Q
    ||||||| ||||||||||| ||||||| | ||||||| || |||||| |||||||  |||||| ||||| ||||| |||||| || ||| |||||    
T  22859570 aacctttaaagtaatttaagcttattagtttacattatttttttgcatatttaaaactattattataaattagaattgaaatatgatataatata 22859664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 314 - 408
Target Start/End: Original strand, 15897921 - 15898014
Alignment:
Q  314 aaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatata 408  Q
    |||||||||| |||||||||| ||||| |||||||||||| ||  |||| ||||||  ||||| || |||||||| |||||| || | |||||||    
T  15897921 aaccttttaaataatttaaacgtattagtctacattaatttttctcacaattaaatagattattat-aactagaattgaaatatgatttcatata 15898014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 324 - 395
Target Start/End: Original strand, 40201751 - 40201824
Alignment:
Q  324 gtaatttaaacttattactctacatta--attatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    ||||||||| ||||||| | |||||||  ||| |||| | ||||||||||||||| ||||||||||| ||||||    
T  40201751 gtaatttaagcttattagtatacattattattttttgaatatttaaatgtattattataaactagaattgaaat 40201824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 325 - 374
Target Start/End: Complemental strand, 11873655 - 11873606
Alignment:
Q  325 taatttaaacttattactctacattaattatttgcacatttaaatgtatt 374  Q
    |||||||||||||||| | |||||||||| | |||| |||||||||||||    
T  11873655 taatttaaacttattagtatacattaattttctgcatatttaaatgtatt 11873606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 335 - 388
Target Start/End: Complemental strand, 14830783 - 14830730
Alignment:
Q  335 ttattactctacattaattatttgcacatttaaatgtattatgataaactagaa 388  Q
    |||||| | |||||||||| |||||| || |||||||||||| |||||||||||    
T  14830783 ttattagtatacattaattttttgcatatataaatgtattattataaactagaa 14830730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 362 - 395
Target Start/End: Original strand, 15230860 - 15230893
Alignment:
Q  362 atttaaatgtattatgataaactagaaatgaaat 395  Q
    ||||||||||||||||||||| ||||||||||||    
T  15230860 atttaaatgtattatgataaattagaaatgaaat 15230893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 335 - 388
Target Start/End: Complemental strand, 16885638 - 16885585
Alignment:
Q  335 ttattactctacattaattatttgcacatttaaatgtattatgataaactagaa 388  Q
    |||||| | |||||||||| |||||| || |||||||||||| |||||||||||    
T  16885638 ttattaatttacattaattttttgcatatataaatgtattattataaactagaa 16885585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 323 - 395
Target Start/End: Complemental strand, 32420554 - 32420482
Alignment:
Q  323 agtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||||||||| ||||||| | |||||||||| |||||| |||||||||| |||| ||||||||||| ||||||    
T  32420554 agtaatttaagcttattagtatacattaattttttgcatatttaaatgttttattataaactagaattgaaat 32420482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 335 - 398
Target Start/End: Complemental strand, 42672949 - 42672886
Alignment:
Q  335 ttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtg 398  Q
    |||||| |||||||||||| |||||| ||||| ||||||||| ||||||||||| |||||||||    
T  42672949 ttattagtctacattaattttttgcatatttatatgtattattataaactagaattgaaatgtg 42672886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 323 - 395
Target Start/End: Complemental strand, 25685494 - 25685422
Alignment:
Q  323 agtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    ||||||||||  |||||| |||||| ||||| |||||| ||||| ||||||||| ||||||||||| ||||||    
T  25685494 agtaatttaagtttattagtctacactaattttttgcatatttatatgtattattataaactagaattgaaat 25685422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 376
Target Start/End: Complemental strand, 9271359 - 9271296
Alignment:
Q  313 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattat 376  Q
    |||| |||| |||||||||| | ||||| | ||||||||||||||| | |||||||||||||||    
T  9271359 taactttttcagtaatttaagcctattagtatacattaattatttgtatatttaaatgtattat 9271296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 325 - 395
Target Start/End: Original strand, 18330704 - 18330774
Alignment:
Q  325 taatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    ||||||||  |||||| | |||||||||| || ||| || |||||||||||| ||||||||||| ||||||    
T  18330704 taatttaaggttattagtatacattaatttttcgcatatataaatgtattattataaactagaattgaaat 18330774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 317 - 395
Target Start/End: Complemental strand, 32684438 - 32684360
Alignment:
Q  317 cttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    ||||| |||||||||| ||||||  |  ||||||| | |||||| ||||||||||| ||| ||||||||||| ||||||    
T  32684438 cttttcagtaatttaagcttatttgtgaacattaaatttttgcatatttaaatgtaatattataaactagaattgaaat 32684360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 313 - 387
Target Start/End: Original strand, 42766494 - 42766568
Alignment:
Q  313 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactaga 387  Q
    ||||||||  |||||||||| |||| || ||||| |||||| ||| ||  |||||||||||||| ||||||||||    
T  42766494 taacctttacagtaatttaagcttactagtctacgttaattttttacatgtttaaatgtattattataaactaga 42766568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 325 - 394
Target Start/End: Complemental strand, 25072884 - 25072816
Alignment:
Q  325 taatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaa 394  Q
    |||||||||||||||| | ||||||| || || ||| ||||||||||||||| ||||| ||||| |||||    
T  25072884 taatttaaacttattagtttacattattt-ttcgcatatttaaatgtattattataaattagaattgaaa 25072816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 313 - 395
Target Start/End: Original strand, 41015710 - 41015794
Alignment:
Q  313 taaccttttaagtaatttaaacttattactctacattaa--ttatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||| |||| |||||||||||||||||| | ||||||||  || ||| || |||||||||||||||  ||||||| || ||||||    
T  41015710 taacttttttagtaatttaaacttattagtatacattaatttttttttcatatttaaatgtattattgtaaactataattgaaat 41015794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 51370425 - 51370349
Alignment:
Q  313 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaa 389  Q
    |||| |||| |||||||||| ||||||| | |||||||||| |||||| |||| |||||||||| ||||||||||||    
T  51370425 taactttttcagtaatttaagcttattagtatacattaattttttgcatatttgaatgtattattataaactagaaa 51370349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 313 - 395
Target Start/End: Complemental strand, 4362408 - 4362326
Alignment:
Q  313 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||| ||||||||||||||| ||||| | | |||||||||  |||||| ||||||||||||||| |||||||| || ||||||    
T  4362408 taactttttaagtaatttaagcttatcagtatacattaatgttttgcatatttaaatgtattattataaactaaaattgaaat 4362326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 314 - 408
Target Start/End: Complemental strand, 22863456 - 22863362
Alignment:
Q  314 aaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatata 408  Q
    ||||||| ||||||||||| ||||||| | ||||||| || || ||| ||||||||||||||| ||||| ||||| |||||| || ||| |||||    
T  22863456 aacctttaaagtaatttaagcttattagtttacattattttttcgcatatttaaatgtattattataaattagaattgaaatatgatataatata 22863362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 313 - 395
Target Start/End: Complemental strand, 35718633 - 35718551
Alignment:
Q  313 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    ||||||||| ||||||||||  |||||| | ||| || ||| |||||| ||| ||||||||||||||||||||||| ||||||    
T  35718633 taacctttttagtaatttaagtttattagtatactttgattttttgcatattcaaatgtattatgataaactagaattgaaat 35718551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 318 - 395
Target Start/End: Complemental strand, 30562475 - 30562398
Alignment:
Q  318 ttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||| ||||||||||  |||||| | |||||||||| |||||| ||||||||||||||| ||||| ||||| ||||||    
T  30562475 ttttcagtaatttaagtttattagtatacattaattttttgcatatttaaatgtattattataaattagaattgaaat 30562398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 326 - 406
Target Start/End: Original strand, 3532785 - 3532865
Alignment:
Q  326 aatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcata 406  Q
    |||||||| |||||| |||||| ||||| |||||| ||||||||||||||| || || ||||| |||||| || |||||||    
T  3532785 aatttaaaattattagtctacaataattttttgcatatttaaatgtattattatgaaatagaattgaaatatgatatcata 3532865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 344 - 408
Target Start/End: Original strand, 4402128 - 4402192
Alignment:
Q  344 tacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatata 408  Q
    |||||||||| |||||| ||||||||||||||| ||||| ||||| |||||| || ||| |||||    
T  4402128 tacattaattttttgcatatttaaatgtattattataaattagaattgaaatatgatataatata 4402192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 316 - 420
Target Start/End: Original strand, 1825088 - 1825194
Alignment:
Q  316 ccttttaagtaatttaaacttattactctacattaattatttgcacat--ttaaatgtattatgataaactagaaatgaaatgtgctatcatataaagtc 413  Q
    |||||| ||||||||||  |||||| | |||||||||| ||| || ||  ||||||||||||| ||||||||||| |||||| || ||  ||||| ||||    
T  1825088 cctttttagtaatttaaggttattagtatacattaattttttacatatatttaaatgtattattataaactagaattgaaatatgatacgatatatagtc 1825187  T
Q  414 agatttc 420  Q
    | |||||    
T  1825188 aaatttc 1825194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 325 - 395
Target Start/End: Complemental strand, 3022799 - 3022728
Alignment:
Q  325 taatttaaacttattactctacattaattattt-gcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||||||| ||||||  | |||||||||| ||| ||| ||||||||||||||| ||||||||||| ||||||    
T  3022799 taatttaagcttatttgtatacattaatttttttgcatatttaaatgtattattataaactagaattgaaat 3022728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 325 - 420
Target Start/End: Complemental strand, 6136154 - 6136059
Alignment:
Q  325 taatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatataaagtcagatttc 420  Q
    |||||||| ||||||| | |||||||||| ||||||  |||||||  ||||| ||||||||||| |||||| || ||  ||||| ||||| |||||    
T  6136154 taatttaagcttattagtatacattaattttttgcatgtttaaatacattattataaactagaattgaaatatgatacaatatatagtcaaatttc 6136059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 313 - 395
Target Start/End: Complemental strand, 27089906 - 27089824
Alignment:
Q  313 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||| |||| |||||||||| ||||||| | ||||||  || ||| || ||||||||||||||| |||||||| || ||||||    
T  27089906 taactttttcagtaatttaagcttattagtatacattgcttttttacatatttaaatgtattattataaactaaaattgaaat 27089824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 335 - 388
Target Start/End: Original strand, 25412210 - 25412263
Alignment:
Q  335 ttattactctacattaattatttgcacatttaaatgtattatgataaactagaa 388  Q
    |||||| | |||||||||| |||||| || |||||||||||| |||||||||||    
T  25412210 ttattagtatacattaattttttgcatatataaatgtattattataaactagaa 25412263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 326 - 395
Target Start/End: Original strand, 45621527 - 45621596
Alignment:
Q  326 aatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    ||||||| ||||||| | | |||||||| |||||| ||||||||||||||| | |||||| || ||||||    
T  45621527 aatttaaccttattagtatccattaattctttgcatatttaaatgtattattacaaactataattgaaat 45621596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 314 - 420
Target Start/End: Complemental strand, 10667773 - 10667666
Alignment:
Q  314 aaccttttaagtaatttaaacttattactctacattaattattt-gcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatataaagt 412  Q
    |||||||| |||||||||| ||||||| | |||||||||| ||| ||| ||||||||||||| | ||||||||||| |||||| || ||  ||||| |||    
T  10667773 aaccttttcagtaatttaagcttattagtatacattaatttttttgcatatttaaatgtattgttataaactagaattgaaatatggtacaatatatagt 10667674  T
Q  413 cagatttc 420  Q
    || |||||    
T  10667673 caaatttc 10667666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 313 - 395
Target Start/End: Original strand, 6228048 - 6228130
Alignment:
Q  313 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||| |||| |||||||||||||||||| | |||||||||| || ||| || |||||||||||| |||||||| || ||||||    
T  6228048 taactttttcagtaatttaaacttattagtatacattaatttttcgcatatataaatgtattattataaactataattgaaat 6228130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 313 - 395
Target Start/End: Complemental strand, 13641011 - 13640929
Alignment:
Q  313 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||| ||||| ||||||||| ||||||| | |||||||||| ||| || || |||||||||||| ||||||||||| ||||||    
T  13641011 taactttttatgtaatttaagcttattagtatacattaattttttacatatataaatgtattattataaactagaattgaaat 13640929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 313 - 395
Target Start/End: Complemental strand, 33248270 - 33248188
Alignment:
Q  313 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||| |||| |||||||||| ||||||| | || ||||||| |||||| ||||||||||||||  ||||||||||| ||||||    
T  33248270 taacttttttagtaatttaagcttattagtataaattaattttttgcatatttaaatgtattagtataaactagaactgaaat 33248188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 318 - 395
Target Start/End: Original strand, 6248720 - 6248797
Alignment:
Q  318 ttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||| |||||||||| ||||||| | |||||||||| ||||||  | |||||||||||| || |||||||| ||||||    
T  6248720 ttttcagtaatttaagcttattagtatacattaattttttgcatttataaatgtattattatgaactagaattgaaat 6248797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 313 - 395
Target Start/End: Complemental strand, 13560163 - 13560081
Alignment:
Q  313 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||| |||| ||||||||||  |||||| | |||||||||| |||||||||||||||||||||| ||||| | ||| ||||||    
T  13560163 taactttttcagtaatttaattttattagtatacattaattttttgcacatttaaatgtattattataaatttgaattgaaat 13560081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 314 - 408
Target Start/End: Original strand, 39848422 - 39848516
Alignment:
Q  314 aaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatata 408  Q
    ||||||| || |||||||||||||||| | ||||||| || |||||| ||| ||||||||||| ||||| ||||| |||||| || ||| |||||    
T  39848422 aacctttaaaataatttaaacttattagtttacattatttttttgcatattaaaatgtattattataaattagaattgaaatatgatataatata 39848516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 327 - 395
Target Start/End: Complemental strand, 10057425 - 10057357
Alignment:
Q  327 atttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||||||||||||| | |||||||||| || ||| || |||||||||||| ||||||||||| ||||||    
T  10057425 atttaaacttattagtatacattaatttttcgcatatataaatgtattattataaactagaattgaaat 10057357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 322 - 408
Target Start/End: Original strand, 5712454 - 5712540
Alignment:
Q  322 aagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatata 408  Q
    ||||||||||| ||||||| | ||||||| || ||  || ||||||||||||||| ||||| ||||| ||||||||| ||| |||||    
T  5712454 aagtaatttaagcttattagtttacattattttttcacatatttaaatgtattattataaattagaattgaaatgtgatatgatata 5712540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 313 - 421
Target Start/End: Complemental strand, 16055180 - 16055069
Alignment:
Q  313 taaccttttaagtaatttaaacttattactctacattaattattt-gcacatttaaatgtat--tatgataaactagaaatgaaatgtgctatcatataa 409  Q
    |||| |||| |||||||||| ||||||| | |||||||||| ||| ||| ||||||||||||  ||| ||||||||||| |||||| || ||  |||||     
T  16055180 taactttttcagtaatttaagcttattagtatacattaatttttttgcatatttaaatgtattatattataaactagaattgaaatctgatacaatatat 16055081  T
Q  410 agtcagatttct 421  Q
    ||||| ||||||    
T  16055080 agtcaaatttct 16055069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 325 - 385
Target Start/End: Complemental strand, 30992512 - 30992453
Alignment:
Q  325 taatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaacta 385  Q
    ||||| |||||||||| |||| ||||||| |||||| ||||||||||||||| ||||||||    
T  30992512 taattcaaacttattagtctatattaatt-tttgcatatttaaatgtattattataaacta 30992453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 324 - 395
Target Start/End: Complemental strand, 9730336 - 9730266
Alignment:
Q  324 gtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||||||||  |||||| | |||||||||| ||| || ||||||||||||||| ||||||||||| ||||||    
T  9730336 gtaatttaaggttattagtatacattaatt-tttacatatttaaatgtattattataaactagaattgaaat 9730266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 314 - 408
Target Start/End: Original strand, 16202001 - 16202098
Alignment:
Q  314 aaccttttaagtaatttaaacttattactctacattaattattt---gcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatata 408  Q
    ||||||| || |||||||||||||||| | ||||||| || |||   ||| ||||||||||||||| ||||| ||||| |||||| || ||| |||||    
T  16202001 aacctttaaaataatttaaacttattagtttacattatttttttttcgcatatttaaatgtattattataaattagaattgaaatatgatataatata 16202098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 388
Target Start/End: Complemental strand, 40629380 - 40629305
Alignment:
Q  313 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaa 388  Q
    |||| |||| |||||||| || |||||| ||||||||| || || ||| |||||||| |||||| |||||||||||    
T  40629380 taacattttgagtaatttgaatttattagtctacattagtttttcgcatatttaaatttattattataaactagaa 40629305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 395
Target Start/End: Complemental strand, 43898285 - 43898202
Alignment:
Q  313 taaccttttaagtaatttaaacttattactctacattaa-ttatttgcacatttaaatgtattatgataaactagaaatgaaat 395  Q
    |||| |||||||||||||||||||||||   |||||||| || |||||| ||||||| ||||||| || || ||||| ||||||    
T  43898285 taactttttaagtaatttaaacttattaaaatacattaatttttttgcatatttaaaagtattattattaaatagaattgaaat 43898202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 335 - 388
Target Start/End: Original strand, 9716199 - 9716252
Alignment:
Q  335 ttattactctacattaattatttgcacatttaaatgtattatgataaactagaa 388  Q
    |||||| | |||||||||| |||||| || |||||||||||| |||||||||||    
T  9716199 ttattagtatacattaattttttgcatatataaatgtattattataaactagaa 9716252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 314 - 408
Target Start/End: Complemental strand, 7483 - 7390
Alignment:
Q  314 aaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatata 408  Q
    ||||||| ||||||||||| ||||||| | ||||||| || || ||| ||||||||||||||| ||||| ||||| |||||| || ||| |||||    
T  7483 aacctttaaagtaatttaagcttattagtttacattattt-ttcgcatatttaaatgtattattataaattagaattgaaatatgatataatata 7390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 420
Target Start/End: Original strand, 10867 - 10973
Alignment:
Q  313 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctatcatataaagt 412  Q
    |||| |||| ||||||||||  |||||| | | |||||||| |||||| |||||||||||||||  ||||||| || || |||||| ||| ||||| |||    
T  10867 taactttttcagtaatttaagtttattagtattcattaatt-tttgcatatttaaatgtattattctaaactataattggaatgtgatataatatatagt 10965  T
Q  413 cagatttc 420  Q
    || |||||    
T  10966 caaatttc 10973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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