View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_high_32 (Length: 392)
Name: NF4445_high_32
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_high_32 |
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Alignment Details
Target: chr6 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 17 - 377
Target Start/End: Complemental strand, 14162081 - 14161721
Alignment:
| Q |
17 |
atgaaaagtgctagaatatcaaccgtgtccggtatatctacaatcaaatcatcagccgattcgactaatttggtgaatcctttgtaaacttgtgaaggat |
116 |
Q |
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| T |
14162081 |
atgaaaagtgctagaatatcaaccgtgtccggtatatctacaatcaaatcatcagccgattcgactaatttggtgaatcctttgtaaacttgtgaaggat |
14161982 |
T |
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| Q |
117 |
gaattatgtcagcataaagtgcagataagagaattgcagccatttctttttctttgtcgtgtctgtccattgacattgagacaagctttttgacaaaata |
216 |
Q |
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| T |
14161981 |
gaattatgtcagcataaagtgcagataagagaattgcagccatttctttttctttgtcgtgtctgtccattgacattgagacaagctttttgacaaaata |
14161882 |
T |
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| Q |
217 |
gtagctgtattctggtttaccaatttctctaacttcactcattgttgcgacaacgtcgtctgtggcaaagtattcttccactatcattgtagcttttttc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
14161881 |
gtagctgtattctggtttaccaatttctctaacttcactcattgttgcgacaacgtcgtctgtggcaaagtattcttccactattattgtagcttttttc |
14161782 |
T |
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| Q |
317 |
ttgtactcttccaatgcagtgtccgttttcttatcatttgaatcatcgaattcctacaaaa |
377 |
Q |
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||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
14161781 |
ttgtactcttccaatgcagcgttcgttttcttatcatttgaatcatcgaattcctacaaaa |
14161721 |
T |
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