View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_high_34 (Length: 383)
Name: NF4445_high_34
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 55 - 364
Target Start/End: Complemental strand, 7804253 - 7803930
Alignment:
| Q |
55 |
tgaagtaaccaatcttatttaacaaaataaagtttggttgttgctgtattcatcgtggatctattttggagtgaataaattatggttgagaaagctaaca |
154 |
Q |
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| T |
7804253 |
tgaagtaaccgatcttatttaacaaaataaagtttggttgttgttgtattcatcgtggatctattttggagtgaataaattatggttgagaaagctaaca |
7804154 |
T |
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| Q |
155 |
aaaatcttgatgccat-----gacttccctaacacaacagttatgacttgag----caaaaattaaaacaacggttatgataaagagaattaagttgaag |
245 |
Q |
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| T |
7804153 |
aaaatcttgatgccatgagtagacttccctaacacaacagttatgacttgagaaaaaaaaaattaaaaccacggttatgataaagagaattaagttgaag |
7804054 |
T |
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| Q |
246 |
acaaattttggtgggtgg-----ggcatagctcctaattaatcaataccttaattatatccattaacaattcaaatattatttttagttcatcaaatgat |
340 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7804053 |
acaaattttggtgggtggggcatggcatagctcctaattaatcaataccttaattatatccattaacaattcaaatattatttttagttcatcaaatgat |
7803954 |
T |
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| Q |
341 |
tgaaaatgattggcatgtaactac |
364 |
Q |
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|||||||||||||||||||||||| |
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| T |
7803953 |
tgaaaatgattggcatgtaactac |
7803930 |
T |
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