View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_high_35 (Length: 378)
Name: NF4445_high_35
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_high_35 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 45197991 - 45198319
Alignment:
| Q |
1 |
tccttttaatacatacttactttttaattaannnnnnnaattctttaacttgaagagatatgtacggtgagcattgacgtaagtaagaagtatttgtgat |
100 |
Q |
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| T |
45197991 |
tccttttaatacatacttactttttaattaatttttttaattctttaacttggagagatatgtacggtgagcattgaagtaagtaaggagtatttgtgaa |
45198090 |
T |
|
| Q |
101 |
atggaattgaaaagaagaagaaaagcacatgaaatgaaagtgagttgagtaatttttattgggggtgcacttactttcagtctaaagtcatttgtcctct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45198091 |
atggaattgaaaagaagaagaaaagcacatgaaatgaaagtgagttgagtaatttttattgggggtgcacttactttcagtctaaagtcatttgtcctct |
45198190 |
T |
|
| Q |
201 |
ctccagttagaatcacaaaaggacaaagattgggttttcttgatatggcaaaagctaaaccttaaagggaccattttattttttccaacttgttcatttt |
300 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45198191 |
ctctagttagaatcacaaaaggacaaagattgggttttcttgatatggcaaaagctaaaccttaaagggaccattttattttttccaacttgttcatttt |
45198290 |
T |
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| Q |
301 |
tctagtctctagaccaattcaccacaaac |
329 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
45198291 |
tctagtctctagaccaattcaccacaaac |
45198319 |
T |
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