View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_high_38 (Length: 361)
Name: NF4445_high_38
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_high_38 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 23 - 213
Target Start/End: Complemental strand, 25100247 - 25100057
Alignment:
| Q |
23 |
aattacgttggttgttatttgttaggctttttgtcattgcaattgaagaaaaaattaatttagaaaaataaaatgaggagacacatgaattcaaccaatg |
122 |
Q |
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| T |
25100247 |
aattacgttggttattatttgttaggctttttgtcattgcaattgaagaaaaaattaatttagaaaaataaaatgaggagacacatgaattcaatcaatg |
25100148 |
T |
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| Q |
123 |
aatcacacgtaggttagtggaaagagattgaagctgatgagtaacttctttactcacattttgcacgttcacgtataaattaatagtactg |
213 |
Q |
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| T |
25100147 |
aatcacacgtaggttagtggaaagagattgaagctgatgagtaacttctttactcacattttgcacgttcacgtataaattaatagtactg |
25100057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 262 - 345
Target Start/End: Complemental strand, 25100006 - 25099923
Alignment:
| Q |
262 |
ggaaaatagtactattcatcttttgttgaagaaagtcaaatttcatactatgttttgagaaatatttacttgtgaagttgtttg |
345 |
Q |
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| T |
25100006 |
ggaaaatagtactatttatcttttgttgaaaaaagtcaaatttcatactatgttttgagaaatatttacttgtgaagttgtttg |
25099923 |
T |
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