View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4445_high_41 (Length: 354)

Name: NF4445_high_41
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4445_high_41
NF4445_high_41
[»] chr3 (3 HSPs)
chr3 (174-339)||(36432779-36432942)
chr3 (207-339)||(47749742-47749872)
chr3 (20-58)||(44883258-44883296)
[»] chr7 (2 HSPs)
chr7 (207-339)||(15683396-15683526)
chr7 (20-94)||(10543585-10543659)
[»] chr2 (1 HSPs)
chr2 (20-94)||(29154237-29154311)
[»] chr8 (2 HSPs)
chr8 (20-85)||(2241546-2241611)
chr8 (12-77)||(38655094-38655159)
[»] chr5 (1 HSPs)
chr5 (20-93)||(35160602-35160675)
[»] chr4 (5 HSPs)
chr4 (243-339)||(47596077-47596171)
chr4 (41-85)||(5618315-5618359)
chr4 (11-78)||(17040072-17040140)
chr4 (41-85)||(18636035-18636079)
chr4 (22-78)||(53563299-53563355)


Alignment Details
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 174 - 339
Target Start/End: Original strand, 36432779 - 36432942
Alignment:
Q  174 tttctacgaaatgtaaatccacgaaatccacgg-aaatccaaatccgtttacaaccactaccctctttgtattccaccaagtacataattaattgccatt 272  Q
    |||||||||| ||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  36432779 tttctacgaa-tgtcaatccacgaaatccacgttaaatccaaatccgtttacaaccactaccctctttgtattccaccaagtacctaattaattgtcatt 36432877  T
Q  273 cactatttaattaaagaacatgtgtgtacattcttagttttcgtaggcaattttaatcgtggtatat 339  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||    
T  36432878 cactatttaattaaagaaca--cgtgtacattcttagttttcgtaggcaattttaatcgtggtatat 36432942  T

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Target: chr3; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 207 - 339
Target Start/End: Complemental strand, 47749872 - 47749742
Alignment:
Q  207 aaatccaaatccgtttacaaccactaccctctttgtattccaccaagtacataattaattgccattcactatttaattaaagaacatgtgtgtacattct 306  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   |||||||||||    
T  47749872 aaatctaaatctgtttacaaccactaccctctttgtattccaccaagtacctaattaattgccattcactatttaattaaagaaca--cgtgtacattct 47749775  T
Q  307 tagttttcgtaggcaattttaatcgtggtatat 339  Q
    |||||||||||||||||||||||||||||||||    
T  47749774 tagttttcgtaggcaattttaatcgtggtatat 47749742  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 44883258 - 44883296
Alignment:
Q  20 cataagaaaataaaaacatgcatttgaaacttgaaaatc 58  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  44883258 cataagaaaataaaaacatgaatttgaagcttgaaaatc 44883296  T

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Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 207 - 339
Target Start/End: Original strand, 15683396 - 15683526
Alignment:
Q  207 aaatccaaatccgtttacaaccactaccctctttgtattccaccaagtacataattaattgccattcactatttaattaaagaacatgtgtgtacattct 306  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||   |||| ||||||    
T  15683396 aaatccaaatccgtttacaaccactgccctctttgtattccaccaagtacctaattaattaccattcactatttaattaaagaaca--cgtgtccattct 15683493  T
Q  307 tagttttcgtaggcaattttaatcgtggtatat 339  Q
    |||||||| ||||||||||||||||||||||||    
T  15683494 tagttttcataggcaattttaatcgtggtatat 15683526  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 10543585 - 10543659
Alignment:
Q  20 cataagaaaataaaaacatgcatttgaaacttgaaaatccatgtacaaatagaccaaaaagacaaacttaaaatg 94  Q
    ||||||||| ||||| |||  ||||||| ||||||||||||| || |||| |||||||| |||||| || |||||    
T  10543585 cataagaaattaaaaccataaatttgaagcttgaaaatccatataaaaatggaccaaaaggacaaaattgaaatg 10543659  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 29154237 - 29154311
Alignment:
Q  20 cataagaaaataaaaacatgcatttgaaacttgaaaatccatgtacaaatagaccaaaaagacaaacttaaaatg 94  Q
    ||||||||||||||| |||| ||||||| ||||||||| ||| | ||||||||||||||||||||| || |||||    
T  29154237 cataagaaaataaaaccatgaatttgaagcttgaaaattcatatgcaaatagaccaaaaagacaaaattgaaatg 29154311  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 2241611 - 2241546
Alignment:
Q  20 cataagaaaataaaaacatgcatttgaaacttgaaaatccatgtacaaatagaccaaaaagacaaa 85  Q
    ||||||||||||||| |||| ||||||| |||||||||||||   ||||| |||||||| ||||||    
T  2241611 cataagaaaataaaaccatgaatttgaagcttgaaaatccatacgcaaatggaccaaaaggacaaa 2241546  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 38655159 - 38655094
Alignment:
Q  12 atgagaggcataagaaaataaaaacatgcatttgaaacttgaaaatccatgtacaaatagaccaaa 77  Q
    ||||||| || ||||||| |||| |||| |||||||||||||||||| || | ||||| |||||||    
T  38655159 atgagagtcagaagaaaagaaaatcatgaatttgaaacttgaaaatcaatatgcaaatggaccaaa 38655094  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 35160602 - 35160675
Alignment:
Q  20 cataagaaaataaaaacatgcatttgaaacttgaaaatccatgtacaaatagaccaaaaagacaaacttaaaat 93  Q
    ||||||||||||||| |||| ||||||| ||||||||| ||| | ||||| |||||||| | |||| |||||||    
T  35160602 cataagaaaataaaatcatgaatttgaagcttgaaaattcatatgcaaattgaccaaaaggtcaaaattaaaat 35160675  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 339
Target Start/End: Complemental strand, 47596171 - 47596077
Alignment:
Q  243 attccaccaagtacataattaattgccattcactatttaattaaagaacatgtgtgtacattcttagttttcgtaggcaattttaatcgtggtatat 339  Q
    ||||||||||||||| |||||| || ||| |||| ||| |||||||||||   || ||||||||||||||| || |||||  || ||||||||||||    
T  47596171 attccaccaagtacaaaattaagtgtcatacactttttgattaaagaaca--cgtatacattcttagttttagtgggcaacattgatcgtggtatat 47596077  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 5618315 - 5618359
Alignment:
Q  41 atttgaaacttgaaaatccatgtacaaatagaccaaaaagacaaa 85  Q
    ||||||||||||||||  ||| || ||||||||||||||||||||    
T  5618315 atttgaaacttgaaaactcatataaaaatagaccaaaaagacaaa 5618359  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 17040072 - 17040140
Alignment:
Q  11 aatgagagg-cataagaaaataaaaacatgcatttgaaacttgaaaatccatgtacaaatagaccaaaa 78  Q
    ||||||||| ||||||||||||||| |||  ||||||| ||||||||||||| | |||||  |||||||    
T  17040072 aatgagaggtcataagaaaataaaatcatagatttgaagcttgaaaatccatatgcaaatgaaccaaaa 17040140  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 18636035 - 18636079
Alignment:
Q  41 atttgaaacttgaaaatccatgtacaaatagaccaaaaagacaaa 85  Q
    ||||||||||||||||||||| || ||||  ||||||||||||||    
T  18636035 atttgaaacttgaaaatccatataaaaatttaccaaaaagacaaa 18636079  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 53563299 - 53563355
Alignment:
Q  22 taagaaaataaaaacatgcatttgaaacttgaaaatccatgtacaaatagaccaaaa 78  Q
    |||||||||||||||||| |||| || |||||||||| || | ||||| ||||||||    
T  53563299 taagaaaataaaaacatgaattttaagcttgaaaatcaatatgcaaatggaccaaaa 53563355  T

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