View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_high_44 (Length: 348)
Name: NF4445_high_44
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_high_44 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 224
Target Start/End: Complemental strand, 4820789 - 4820578
Alignment:
| Q |
10 |
attattcttaagaattcgtgtaaggagttcgaacgaatttatgacacatgtttaattaatcaaaaagatatactaatattttagtattggtttggagttg |
109 |
Q |
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| T |
4820789 |
attattcttaagaattcgtgtaaggagttcgaacgaatttatgacacatgtttaattaatcaaaaagatatactaatattttagtattggtttggagttg |
4820690 |
T |
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| Q |
110 |
gttaaagttaagctatggtcacatacccattttatattctatttcttacaaaactctccctgtgtaacacggcaggagcatagagaggcataatactact |
209 |
Q |
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| T |
4820689 |
gttaaagttaagctatggtcacatacccattttatattctatttcttacaaaactctccctgtgtaacacggcaggagcacagaaaggcataa---tact |
4820593 |
T |
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| Q |
210 |
ggccatacaagccag |
224 |
Q |
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| T |
4820592 |
ggccatacaagccag |
4820578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 4810769 - 4810719
Alignment:
| Q |
79 |
atactaatattttagtattggtttggagttggttaaagttaagctatggtc |
129 |
Q |
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| T |
4810769 |
atactaatattttattattggtttgaagttggttaaagttaagctaaggtc |
4810719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 4820534 - 4820495
Alignment:
| Q |
291 |
agcagaaaagaactgaagataaagcaccttgccccgaaac |
330 |
Q |
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| T |
4820534 |
agcagaaaagaactgaacataaagcaccttgccccgaaac |
4820495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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