View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_high_46 (Length: 338)
Name: NF4445_high_46
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_high_46 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 9 - 322
Target Start/End: Complemental strand, 18079770 - 18079454
Alignment:
| Q |
9 |
agcataggcaaagcaacacacattaataaaaccatagagaaaaaagcaagaa---atggacagcaagaagtgagacattttgacgaaaaagtacattgtc |
105 |
Q |
| |
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||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
18079770 |
agcatgggcaaagcaacacacattaataaaacgatagagaaaaaagcaagaagaaatggacagcaagaagtgagacatttggacgaaaaagtacattgtc |
18079671 |
T |
|
| Q |
106 |
tctttgctgctatatccttctcgaccatttgttcttcatccgatcatcttaaatatggaagaagtctttcagcatatacttggagagctcgacctcatgg |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18079670 |
tctttgctgctatatccttctcgaccatttgttcttcatccaatcgtcttaaatatggaagaagtctttcagcatatacttggagagctcgacctcatgg |
18079571 |
T |
|
| Q |
206 |
ttgatgttggtttttgtcttcattttaattgcctgtagtgaaccagattatcacatttcaaatatagaatacaacaaatcacatcaatagttaatctaaa |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18079570 |
ttgatgttggtttttgtcttcattttaattgcctgtagtgaaccagattatcacatttcaaatatagaatacaacaaatcacatcaatagttaatctaaa |
18079471 |
T |
|
| Q |
306 |
aaggggagaaacagaac |
322 |
Q |
| |
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||||||||||||||||| |
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| T |
18079470 |
aaggggagaaacagaac |
18079454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 9 - 302
Target Start/End: Complemental strand, 51480129 - 51479832
Alignment:
| Q |
9 |
agcataggcaaagcaacacacattaataaaaccatagagaaaaaagcaagaa---atggacagcaagaagtgagacattttgacgaaaaagtacattgtc |
105 |
Q |
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||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||| ||| ||||||||||||| ||||| |
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| T |
51480129 |
agcatgggcaaagcaacacacattaataaaaggatagagaaaaaagcaagaagaaatggacagcaagaaatgagacttttggacgaaaaagtaccttgtc |
51480030 |
T |
|
| Q |
106 |
tctttgctgctatatccttctcgaccatttgttcttcatccgatcatcttaaatatggaagaagt-ctttcagcatatacttggagagctcgacctcatg |
204 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||| |||||||||||||||||||| |||||| |
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| T |
51480029 |
tctttgcttctatctccttctcgaccatttgttcttcatccaatcgtcttaaatatggaagaagttctttcaccatatacttggagagctcgaactcatg |
51479930 |
T |
|
| Q |
205 |
gttgatgttggtttttgtcttcattttaattgcctgtagtgaaccagattatcacatttcaaatatagaatacaacaaatcacatcaatagttaatct |
302 |
Q |
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|||| ||||||||| ||||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
51479929 |
gttgttgttggtttctgtcttcgttttaatttcctgtagtgaaccagatgatcacatttcaaatgtagaatacaacaaatcacatgaatagttaatct |
51479832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 68 - 315
Target Start/End: Original strand, 30207275 - 30207522
Alignment:
| Q |
68 |
gcaagaagtgagacattttgacgaaaaagtacattgtctctttgctgctatatccttctcgaccatttgttcttcatccgatcatcttaaatatggaaga |
167 |
Q |
| |
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|||||||||||||| || || |||||| ||| ||||||||||||| |||| ||||||||| ||||||||||||||||| || ||||||||| |||||| |
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| T |
30207275 |
gcaagaagtgagactcttggaggaaaaa-taccttgtctctttgcttctatctccttctcggccatttgttcttcatccaattgtcttaaatacggaaga |
30207373 |
T |
|
| Q |
168 |
agt-ctttcagcatatacttggagagctcgacctcatggttgatgttggtttttgtcttcattttaattgcctgtagtgaaccagattatcacatttcaa |
266 |
Q |
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||| ||||| |||||||||||||||||| |||||||||| ||| ||||| | ||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
30207374 |
agtattttcaacatatacttggagagctcaacctcatggtcattgtaggtttctcgcttatctttaattgcctgtagtaaaccagattatcacatttcaa |
30207473 |
T |
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| Q |
267 |
atatagaatacaacaaatcacatcaatagttaatctaaaaaggggagaa |
315 |
Q |
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|| |||||| |||||||||||| ||||||| ||||| || |||||||| |
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| T |
30207474 |
atgtagaatgcaacaaatcacaagaatagttgatctataagggggagaa |
30207522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 56 - 288
Target Start/End: Complemental strand, 51497118 - 51496884
Alignment:
| Q |
56 |
aagaaatggacagcaagaagtgagacattttgacgaaaaagtacattgtctctttgctgctatatccttctcgaccatttgttcttcatccgatcatctt |
155 |
Q |
| |
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|||||||||| ||||||||| |||| ||| || ||||| ||| |||| |||||||| |||| |||||||| ||||||| ||||||||| | | ||| |
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| T |
51497118 |
aagaaatggattgcaagaagtaagacttttggaggaaaatataccttgtatctttgcttctatctccttctcagccatttgctcttcatccaaacgactt |
51497019 |
T |
|
| Q |
156 |
aaatatggaagaagt-ctttcagcatatacttggagagctcgacctcatggttgatgttggtttttgtcttcattttaattgcctgtagtgaaccagatt |
254 |
Q |
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|||||||||| |||| ||||||||||||| |||||| |||| ||||||||| || ||||||||| |||||| |||||||| |||| ||||| | ||||| |
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| T |
51497018 |
aaatatggaaaaagtactttcagcatatatttggagggctcaacctcatggctgttgttggtttccgtcttctttttaatttcctgcagtgaccaagatt |
51496919 |
T |
|
| Q |
255 |
at-cacatttcaaatatagaatacaacaaatcaca |
288 |
Q |
| |
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|| | ||||| |||| |||||||||| |||||||| |
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| T |
51496918 |
atccccattttaaatgtagaatacaaaaaatcaca |
51496884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 201
Target Start/End: Complemental strand, 51455535 - 51455436
Alignment:
| Q |
103 |
gtctctttgctgctatatccttctcgaccatttgttcttcatccgatcatcttaaatatggaagaagt-ctttcagcatatacttggagagctcgacctc |
201 |
Q |
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||||||| ||| || | |||||||| | |||||||||| ||||| | | |||||||| |||||||||| ||||||||| |||||| |||| ||| ||||| |
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| T |
51455535 |
gtctcttggcttctctttccttctcaatcatttgttctgcatccaaccgtcttaaatgtggaagaagtcctttcagcagatacttagagaactcaacctc |
51455436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 196
Target Start/End: Complemental strand, 27396064 - 27395957
Alignment:
| Q |
90 |
gaaaaagtacattgtctctttgctgctatatccttctcgaccatttgttcttcatccgatcatcttaaatatggaagaag-tctttcagcatatacttgg |
188 |
Q |
| |
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|||||| ||| |||| ||| ||| |||| ||||||||| |||||||||||| |||| ||| | |||||| ||||||||| |||| ||||||||||||| |
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| T |
27396064 |
gaaaaaataccttgtaacttggcttctatctccttctcggccatttgttcttgatccaatcgtattaaatgtggaagaagagctttgagcatatacttgg |
27395965 |
T |
|
| Q |
189 |
agagctcg |
196 |
Q |
| |
|
||| |||| |
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| T |
27395964 |
agaactcg |
27395957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 191
Target Start/End: Original strand, 137941 - 138043
Alignment:
| Q |
90 |
gaaaaagtacattgtctctttgctgctatatccttctcgaccatttgttcttcatccgatcatcttaaatatggaagaag-tctttcagcatatacttgg |
188 |
Q |
| |
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|||||| ||| |||| |||| ||| |||| |||||||| ||||||||||| ||| || |||||||||||||||||| | ||||||||||||||||| |
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| T |
137941 |
gaaaaaataccttgtatcttggcttctatctccttctcagccatttgttctagatctaattctcttaaatatggaagaaggtatttcagcatatacttgg |
138040 |
T |
|
| Q |
189 |
aga |
191 |
Q |
| |
|
||| |
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|
| T |
138041 |
aga |
138043 |
T |
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