View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_high_52 (Length: 323)
Name: NF4445_high_52
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_high_52 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 299
Target Start/End: Original strand, 39877138 - 39877421
Alignment:
| Q |
17 |
gaaccagagtcaggggaaaaattgacaaaaatctctgcnnnnnnnn-tcctaaaactcaacttccattacctattaaagctgtattccacttattgacaa |
115 |
Q |
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| T |
39877138 |
gaaccagagtcaggggaaaaattgacaaaaatctctgcaaaaaaaaatcctaaaactcaacttccattacctattaaagctgtattccacttattgacaa |
39877237 |
T |
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| Q |
116 |
tttttgtgaatgtattagaacacgaagacataagaatctgtctcacacgattctcaaacaccttcatgtgttcatcgtcaactcttaagaaggcaacagc |
215 |
Q |
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| T |
39877238 |
tttttgtgaatgtattagaacacgaagacataagaatctgtctcacacgattctcaaacaccttcatgtgttcatcgtcaactcttaagaaggcaacagc |
39877337 |
T |
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| Q |
216 |
tgttctttcttttgtctgttcattctggagattccagacaccatctcttgtgttactaaatgcttcttgagtcattctaatttt |
299 |
Q |
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| T |
39877338 |
tgttctttcttttgtctgttcattctggagattccagacaccatctcttgtgttactaaatgcttcttgagtcattctaatttt |
39877421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 300
Target Start/End: Original strand, 44780373 - 44780656
Alignment:
| Q |
17 |
gaaccagagtcaggggaaaaattgacaaaaatctctgcnnnnnnnntcctaaaactcaacttccattacctattaaagctgtattccacttattgacaat |
116 |
Q |
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| T |
44780373 |
gaaccaaagtcagggaaaaaattgacaaaaacctctgcaaaaaaactcctagaactcaaattccattacctattaaagctgtattccacttattgacaat |
44780472 |
T |
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| Q |
117 |
ttttgtgaatgtattagaacacgaagacataagaatctgtctcacacgattctcaaacaccttcatgtgttcatcgtcaactcttaagaaggcaacagct |
216 |
Q |
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| T |
44780473 |
ttttgtgaatgtagtagaacccgaagacataagaatctgtctcacacgattctcaaacaccttcatgtgttcatcgtcaactcttaagaaggcaacagct |
44780572 |
T |
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| Q |
217 |
gttctttcttttgtctgttcattctggagattccagacaccatctcttgtgttactaaatgcttcttgagtcattctaattttt |
300 |
Q |
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| T |
44780573 |
gttctttcttttgtctgttcattctggagattccagacaccatctcttgtgttactgaatgcttcttgagtcattctaattttt |
44780656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 85 - 299
Target Start/End: Complemental strand, 2898762 - 2898548
Alignment:
| Q |
85 |
cctattaaagctgtattccacttattgacaatttttgtgaatgtattagaacacgaagacataagaatctgtctcacacgattctcaaacaccttcatgt |
184 |
Q |
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| T |
2898762 |
cctattaaagctgtattccacttattgacaatttttgtgaatgtagtagaacccgaagacataagaatctgcctcacacgattctcaaacattttaatct |
2898663 |
T |
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| Q |
185 |
gttcatcgtcaactcttaagaaggcaacagctgttctttcttttgtctgttcattctggagattccagacaccatctcttgtgttactaaatgcttcttg |
284 |
Q |
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| T |
2898662 |
gttcatcatcaactcttaagaaagcagtagctgtcctttctttggtttgttcattctggagattccaaacaccatctcttgtgttaccgaatgcttcttg |
2898563 |
T |
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| Q |
285 |
agtcattctaatttt |
299 |
Q |
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|||| |||||||||| |
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| T |
2898562 |
agtcgttctaatttt |
2898548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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