View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4445_high_54 (Length: 319)
Name: NF4445_high_54
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_high_54 |
 | |
|
| [»] scaffold0029 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 11 - 302
Target Start/End: Complemental strand, 7303712 - 7303421
Alignment:
| Q |
11 |
cacagaacaattcaacatgatggatgatatggttgcggaagctttaggggtggaattgtcttacgatgaagatgttgaagatgatgaagaggaacaaccc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7303712 |
cacagaacaattcaacatgatggatgatatggttgcggatgctttaggggtggaattgtcttacggtgaagatgttgaagatgatgaagaggaacaaccc |
7303613 |
T |
|
| Q |
111 |
ccgaatgagaaggcgcaaagattttaccgattgttgagtgaaagtaatacacctttgtatgaagggtcttcgtactctaagttatctatgtgtgtgtggc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
7303612 |
ccgaatgagaaggcgcaaagattttaccgattgttgagtgaaagtaatacacctttgtatgaagggtcttcgcactctaagctatctatgtgtgtgtggc |
7303513 |
T |
|
| Q |
211 |
ttttatctcataagtcgaattatcttaatcctgatgatggtatggatgatattacgaagatgttgaaggccgtgactccgttcaaagataat |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7303512 |
ttttatctcataagtcgaattatcttaatcctgatgatggtatggatgatattacgaagatgttgaaggccgtgactccgttcaaagataat |
7303421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 11 - 302
Target Start/End: Complemental strand, 18339595 - 18339304
Alignment:
| Q |
11 |
cacagaacaattcaacatgatggatgatatggttgcggaagctttaggggtggaattgtcttacgatgaagatgttgaagatgatgaagaggaacaaccc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
18339595 |
cacagaacaattcaacatgatggatgatatggttgcggacgctttaggggtggaattgtcttatggtgaagatgttgaagatgatgaagaggaacaaccc |
18339496 |
T |
|
| Q |
111 |
ccgaatgagaaggcgcaaagattttaccgattgttgagtgaaagtaatacacctttgtatgaagggtcttcgtactctaagttatctatgtgtgtgtggc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
18339495 |
ccgaatgagaaggcgcaaagattttaccgattgttgagtgaaagtaatacacctttgtatgaagggtcttcgcactctaagctatctatgtgtgtgtggc |
18339396 |
T |
|
| Q |
211 |
ttttatctcataagtcgaattatcttaatcctgatgatggtatggatgatattacgaagatgttgaaggccgtgactccgttcaaagataat |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18339395 |
ttttatctcataagtcgaattatcttaatcctgatgatggtatggatgatattacgaagatgttgaaggccgtgactccgttcaaagataat |
18339304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 11 - 302
Target Start/End: Complemental strand, 37572477 - 37572186
Alignment:
| Q |
11 |
cacagaacaattcaacatgatggatgatatggttgcggaagctttaggggtggaattgtcttacgatgaagatgttgaagatgatgaagaggaacaaccc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37572477 |
cacagaacaattcaacatgatggatgatatggttgcggatgctttaggggtggaattgtcttacggtgaagatgttgaagatgatgaagaggaacaaccc |
37572378 |
T |
|
| Q |
111 |
ccgaatgagaaggcgcaaagattttaccgattgttgagtgaaagtaatacacctttgtatgaagggtcttcgtactctaagttatctatgtgtgtgtggc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
37572377 |
ccgaatgagaaggcgcaaagattttaccgattgttgagtgaaagtaatacacctttgtatgaagggtcttcgcactctaagctatctatgtgtgtgtggc |
37572278 |
T |
|
| Q |
211 |
ttttatctcataagtcgaattatcttaatcctgatgatggtatggatgatattacgaagatgttgaaggccgtgactccgttcaaagataat |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37572277 |
ttttatctcataagtcgaattatcttaatcctgatgatggtatggatgatattacgaagatgttgaaggccgtgactccgttcaaagataat |
37572186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 33889479 - 33889256
Alignment:
| Q |
11 |
cacagaacaattcaacatgatggatgatatggttgcggaagctttaggggtggaattgtcttacgatgaagatgttgaagatgatgaagaggaacaaccc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33889479 |
cacagaacaattcaacatgatggatgatatggttgcggatgctttaggggtggaattgtcttacggtgaagatgttgaagatgatgaagaggaacaaccc |
33889380 |
T |
|
| Q |
111 |
ccgaatgagaaggcgcaaagattttaccgattgttgagtgaaagtaatacacctttgtatgaagggtcttcgtactctaagttatctatgtgtgtgtggc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
33889379 |
ccgaatgagaaggcgcaaagattttaccgattgttgagtgaaagtaatacacctttgtatgaagggtcttcgcactctaagctatctatgtgtgtgtggc |
33889280 |
T |
|
| Q |
211 |
ttttatctcataagtcgaattatc |
234 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
33889279 |
ttttatctcataagtcgaattatc |
33889256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 34608955 - 34609164
Alignment:
| Q |
15 |
gaacaattcaacatgatggatgatatggttgcggaagctttaggggtggaattgtcttacgatgaagatgttgaagatgatgaagaggaacaacccccga |
114 |
Q |
| |
|
|||||||||||||||||| |||||||||| || || |||||||| ||||||||||||||| || | || ||||||||||| ||| ||||||||||| | |
|
|
| T |
34608955 |
gaacaattcaacatgatgaatgatatggtcgctgatgctttaggtgtggaattgtcttacaataatgacgttgaagatgaacaaggcgaacaacccccaa |
34609054 |
T |
|
| Q |
115 |
atgagaaggcgcaaagattttaccgattgttgagtgaaagtaatacacctttgtatgaagggtcttcgtactctaagttatctatgtgtgtgtggctttt |
214 |
Q |
| |
|
||||| | || || ||||||||| ||||||| |||| ||||| || ||| |||||||| | || | || |||||||| ||||||||| | ||||| |
|
|
| T |
34609055 |
atgagcaagcccagagattttacgagttgttgaatgaatgtaatgtcccactgtttgaagggtgtacgcaatcaaagttatcaatgtgtgtgagactttt |
34609154 |
T |
|
| Q |
215 |
atctcataag |
224 |
Q |
| |
|
| |||||||| |
|
|
| T |
34609155 |
agctcataag |
34609164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 5022029 - 5021820
Alignment:
| Q |
15 |
gaacaattcaacatgatggatgatatggttgcggaagctttaggggtggaattgtcttacgatgaagatgttgaagatgatgaagaggaacaacccccga |
114 |
Q |
| |
|
|||||||||||||||||| |||||||||| || || |||||||| |||||||||||||| || | || ||||||||||| ||| ||||||||||| | |
|
|
| T |
5022029 |
gaacaattcaacatgatgaatgatatggtcgctgatgctttaggtatggaattgtcttacaataatgacgttgaagatgaacaaggcgaacaacccccaa |
5021930 |
T |
|
| Q |
115 |
atgagaaggcgcaaagattttaccgattgttgagtgaaagtaatacacctttgtatgaagggtcttcgtactctaagttatctatgtgtgtgtggctttt |
214 |
Q |
| |
|
||||| | || |||||||||||| ||||||| |||| ||||| || ||| |||||||| | || | || |||||||| |||||||| | ||||| |
|
|
| T |
5021929 |
atgagcaagcccaaagattttacgagttgttgaatgaatgtaatgtcccactgtttgaagggtgtacgcaatcaaagttatcaatgtgtgtcagactttt |
5021830 |
T |
|
| Q |
215 |
atctcataag |
224 |
Q |
| |
|
| |||||||| |
|
|
| T |
5021829 |
agctcataag |
5021820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 22125022 - 22124813
Alignment:
| Q |
15 |
gaacaattcaacatgatggatgatatggttgcggaagctttaggggtggaattgtcttacgatgaagatgttgaagatgatgaagaggaacaacccccga |
114 |
Q |
| |
|
|||||||||||||||||| |||||||||| || || |||||||| ||||||||||||||| || | || |||||||||| ||| ||||||||||| | |
|
|
| T |
22125022 |
gaacaattcaacatgatgaatgatatggtcgctgatgctttaggtgtggaattgtcttacaataatgacattgaagatgaacaaggcgaacaacccccaa |
22124923 |
T |
|
| Q |
115 |
atgagaaggcgcaaagattttaccgattgttgagtgaaagtaatacacctttgtatgaagggtcttcgtactctaagttatctatgtgtgtgtggctttt |
214 |
Q |
| |
|
||||| | || || ||||||||| ||||||| |||| ||||| || ||| |||||||| | || | || |||||||| |||||||| | ||||| |
|
|
| T |
22124922 |
atgagcaagcccagagattttacaagttgttgaatgaatgtaatgtcccactgtttgaagggtgtacgcaatcaaagttatcaatgtgtgtcagactttt |
22124823 |
T |
|
| Q |
215 |
atctcataag |
224 |
Q |
| |
|
| |||||||| |
|
|
| T |
22124822 |
agctcataag |
22124813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 11 - 302
Target Start/End: Complemental strand, 38971009 - 38970718
Alignment:
| Q |
11 |
cacagaacaattcaacatgatggatgatatggttgcggaagctttaggggtggaattgtcttacgatgaagatgttgaagatgatgaagaggaacaaccc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38971009 |
cacagaacaattcaacatgatggatgatatggttgcggacgctttaggggtggaattgtcttacggtgaagatgttgaagatgatgaagaggaacaaccc |
38970910 |
T |
|
| Q |
111 |
ccgaatgagaaggcgcaaagattttaccgattgttgagtgaaagtaatacacctttgtatgaagggtcttcgtactctaagttatctatgtgtgtgtggc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
38970909 |
ccgaatgagaaggcgcaaagattttaccgattgttgagtgaaagtaatacacctttgtatgaagggtcttcgcactctaagctatctatgtgtgtgtggc |
38970810 |
T |
|
| Q |
211 |
ttttatctcataagtcgaattatcttaatcctgatgatggtatggatgatattacgaagatgttgaaggccgtgactccgttcaaagataat |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38970809 |
ttttatctcataagtcgaattatcttaatcctgatgatggtatggatgatattacgaagatgttgaaggccgtgactccgttcaaagataat |
38970718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 53 - 275
Target Start/End: Original strand, 13089065 - 13089286
Alignment:
| Q |
53 |
tttaggggtggaattgtcttacgatgaagatgttgaagatgatgaagaggaacaacccccgaatgagaaggcgcaaagattttaccgattgttgagtgaa |
152 |
Q |
| |
|
||||| |||||||||||||||||| || ||||||||||||||| || |||||||| |||||||||||| |||| ||||||| || |||| | | |||| |
|
|
| T |
13089065 |
tttagtggtggaattgtcttacgacgatgatgttgaagatgatcgaggggaacaactcccgaatgagaaagcgcggagatttt-ccaattgctaaatgaa |
13089163 |
T |
|
| Q |
153 |
agtaatacacctttgtatgaagggtcttcgtactctaagttatctatgtgtgtgtggcttttatctcataagtcgaattatcttaatcctgatgatggta |
252 |
Q |
| |
|
||||||||||| |||| |||||||| |||| || ||||||||||||||||||| ||||| || ||||||| || |||||| | |||| || ||||| |
|
|
| T |
13089164 |
agtaatacaccattgtttgaagggttttcgcacaataagttatctatgtgtgtgaggcttatagctcataactccaattataatgttcctaataatggtg |
13089263 |
T |
|
| Q |
253 |
tggatgatattacgaagatgttg |
275 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
13089264 |
tggatgatgttacgaagatgttg |
13089286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 10801288 - 10801002
Alignment:
| Q |
18 |
caattcaacatgatggatgatatggttgcggaagctttaggggtggaattgtcttacgatgaagatgttgaagatgatgaagaggaacaacccccgaatg |
117 |
Q |
| |
|
||||||||||||||| |||||||||| || || |||||||| ||||||||||||||| |||| |||||||||||||| ||| ||| ||||||| |||| |
|
|
| T |
10801288 |
caattcaacatgatgaatgatatggtcgctgatgctttaggtgtggaattgtcttacaatgatgatgttgaagatgaacaaggtgaagaacccccaaatg |
10801189 |
T |
|
| Q |
118 |
agaaggcgcaaagattttaccgattgttgagtgaaagtaatacacctttgtatgaagggtcttcgtactctaagttatctatgtgtgtgtggcttttatc |
217 |
Q |
| |
|
|| | || ||||||||||||| |||||||||||| ||||| || ||| |||||||| | || | || |||||||| || ||||| | |||||| | |
|
|
| T |
10801188 |
agcaagcccaaagattttaccagttgttgagtgaatgtaatgtcccgctgtttgaagggtgtacgcaatcaaagttatcaatatgtgtcttacttttagc |
10801089 |
T |
|
| Q |
218 |
tcataagtcgaattatcttaatcctgatgatggtatggatgatattacgaagatgttgaaggccgtgactccgttcaaagataattt |
304 |
Q |
| |
|
||||||| | |||||| | | ||||| | ||| ||||| | |||||| |||||||| || |||||||| || ||||||||||| |
|
|
| T |
10801088 |
tcataaggcaaattatggtgtttctgataaaggtgtggattaaattacggagatgttgttggatgtgactccttttaaagataattt |
10801002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 10996301 - 10996441
Alignment:
| Q |
18 |
caattcaacatgatggatgatatggttgcggaagctttaggggtggaattgtcttacgatgaagatgttgaagatgatgaagaggaacaacccccgaatg |
117 |
Q |
| |
|
||||||||||||||| |||||||||| || || |||||||| ||||||||||||||| |||| |||||||||||||| ||| ||| ||||||| |||| |
|
|
| T |
10996301 |
caattcaacatgatgaatgatatggtcgctgatgctttaggtgtggaattgtcttacaatgatgatgttgaagatgaacaaggtgaagaacccccaaatg |
10996400 |
T |
|
| Q |
118 |
agaaggcgcaaagattttaccgattgttgagtgaaagtaat |
158 |
Q |
| |
|
|| | || ||||||||||||| |||||||||||| ||||| |
|
|
| T |
10996401 |
agcaagcccaaagattttaccagttgttgagtgaatgtaat |
10996441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 7623863 - 7623921
Alignment:
| Q |
16 |
aacaattcaacatgatggatgatatggttgcggaagctttaggggtggaattgtcttac |
74 |
Q |
| |
|
||||||||||||||||| |||||||||| || || |||||||| ||||||||||||||| |
|
|
| T |
7623863 |
aacaattcaacatgatgaatgatatggtcgctgatgctttaggtgtggaattgtcttac |
7623921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 11 - 302
Target Start/End: Original strand, 35595517 - 35595808
Alignment:
| Q |
11 |
cacagaacaattcaacatgatggatgatatggttgcggaagctttaggggtggaattgtcttacgatgaagatgttgaagatgatgaagaggaacaaccc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35595517 |
cacagaacaattcaacatgatggatgatatggttgcggacgctttaggggtggaattgtcttacggtgaagatgttgaagatgatgaagaggaacaaccc |
35595616 |
T |
|
| Q |
111 |
ccgaatgagaaggcgcaaagattttaccgattgttgagtgaaagtaatacacctttgtatgaagggtcttcgtactctaagttatctatgtgtgtgtggc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
35595617 |
ccgaatgagaaggcgcaaagattttaccgattgttgagtgaaagtaatacacctttgtatgaagggtcttcgcactctaagctatctatgtgtgtgtggc |
35595716 |
T |
|
| Q |
211 |
ttttatctcataagtcgaattatcttaatcctgatgatggtatggatgatattacgaagatgttgaaggccgtgactccgttcaaagataat |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35595717 |
ttttatctcataagtcgaattatcttaatcctgatgatggtatggatgatattacgaagatgttgaaggccgtgactccgttcaaagataat |
35595808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 11 - 302
Target Start/End: Complemental strand, 37390780 - 37390489
Alignment:
| Q |
11 |
cacagaacaattcaacatgatggatgatatggttgcggaagctttaggggtggaattgtcttacgatgaagatgttgaagatgatgaagaggaacaaccc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37390780 |
cacagaacaattcaacatgatggatgatatggttgcggacgctttaggggtggaattgtcttacggtgaagatgttgaagatgatgaagaggaacaaccc |
37390681 |
T |
|
| Q |
111 |
ccgaatgagaaggcgcaaagattttaccgattgttgagtgaaagtaatacacctttgtatgaagggtcttcgtactctaagttatctatgtgtgtgtggc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
37390680 |
ccgaatgagaaggcgcaaagattttaccgattgttgagtgaaagtaatacacctttgtatgaaggatcttcgtactctaagctatctatgtgtgtgtggc |
37390581 |
T |
|
| Q |
211 |
ttttatctcataagtcgaattatcttaatcctgatgatggtatggatgatattacgaagatgttgaaggccgtgactccgttcaaagataat |
302 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37390580 |
ttttatctcataagtcaaattatcttaatcctgatgatggtatggatgatattacgaagatgttgaaggccgtgactccgttcaaagataat |
37390489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 302
Target Start/End: Complemental strand, 4966808 - 4966517
Alignment:
| Q |
11 |
cacagaacaattcaacatgatggatgatatggttgcggaagctttaggggtggaattgtcttacgatgaagatgttgaagatgatgaagaggaacaaccc |
110 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4966808 |
cacagatcaattcaacatgatggatgatatggttgcggacgctttaggggtggaattgtcttacggtgaagatgttgaagatgatgaagaggaacaaccc |
4966709 |
T |
|
| Q |
111 |
ccgaatgagaaggcgcaaagattttaccgattgttgagtgaaagtaatacacctttgtatgaagggtcttcgtactctaagttatctatgtgtgtgtggc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
4966708 |
ccgaatgagaaggcgcaaagattttaccgattgttgagtgaaagtaatacacctttgtatgaagggtcttcgcactctaagctatctatgtgtgtgtggc |
4966609 |
T |
|
| Q |
211 |
ttttatctcataagtcgaattatcttaatcctgatgatggtatggatgatattacgaagatgttgaaggccgtgactccgttcaaagataat |
302 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4966608 |
ttttatctcataagtcgaactatcttaatcctgatgatggtatggatgatattacgaagatgttgaaggccgttactccgttcaaagataat |
4966517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 81 - 302
Target Start/End: Complemental strand, 37390450 - 37390229
Alignment:
| Q |
81 |
gatgttgaagatgatgaagaggaacaacccccgaatgagaaggcgcaaagattttaccgattgttgagtgaaagtaatacacctttgtatgaagggtctt |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37390450 |
gatgttgaagatgatgaagaggaacaacccccgaatgagaaggcgcaaagattttaccgattgttgagtgaaagtaatacacctttgtatgaagggtctt |
37390351 |
T |
|
| Q |
181 |
cgtactctaagttatctatgtgtgtgtggcttttatctcataagtcgaattatcttaatcctgatgatggtatggatgatattacgaagatgttgaaggc |
280 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37390350 |
cgtactctaagctatctatgtgtgtgtggcttttatctcataagtcaaattatcttaatcctgatgatggtatggatgatattacgaagatgttgaaggt |
37390251 |
T |
|
| Q |
281 |
cgtgactccgttcaaagataat |
302 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
37390250 |
cgtgactccgttcaaagataat |
37390229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 302
Target Start/End: Complemental strand, 33906651 - 33906360
Alignment:
| Q |
11 |
cacagaacaattcaacatgatggatgatatggttgcggaagctttaggggtggaattgtcttacgatgaagatgttgaagatgatgaagaggaacaaccc |
110 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33906651 |
cacagatcaattcaacatgatggatgatatggttgcggacgctttaggggtggaattgtcttacggtgaagatgttgaagatgatgaagaggaacaaccc |
33906552 |
T |
|
| Q |
111 |
ccgaatgagaaggcgcaaagattttaccgattgttgagtgaaagtaatacacctttgtatgaagggtcttcgtactctaagttatctatgtgtgtgtggc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
33906551 |
ccgaatgagaaggcgcaaagattttaccgattgttgagtgaaagtaatacacctttgtatgaagggtcttcgcactctaagctatctatgtgtgtgtggc |
33906452 |
T |
|
| Q |
211 |
ttttatctcataagtcgaattatcttaatcctgatgatggtatggatgatattacgaagatgttgaaggccgtgactccgttcaaagataat |
302 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33906451 |
ttttatctcataagtcgaactatcttaatcctgatgatggtatggatgatattacgaagatgttgaaggccgttactccgttcaaagataat |
33906360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 13510049 - 13510272
Alignment:
| Q |
11 |
cacagaacaattcaacatgatggatgatatggttgcggaagctttaggggtggaattgtcttacgatgaagatgttgaagatgatgaagaggaacaaccc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13510049 |
cacagaacaattcaacatgatggatgatatggttgcggatgctttaggggtggaattgtcttacggtgaagatgttgaagatgatgaagaggaacaaccc |
13510148 |
T |
|
| Q |
111 |
ccgaatgagaaggcgcaaagattttaccgattgttgagtgaaagtaatacacctttgtatgaagggtcttcgtactctaagttatctatgtgtgtgtggc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
13510149 |
ccgaatgagaaggcgcaaagattttaccgattgttgagtgaaagtaatacacctttgtatgaagggtcttcgcactctaagctatctatgtgtgtgtggc |
13510248 |
T |
|
| Q |
211 |
ttttatctcataagtcgaattatc |
234 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
13510249 |
ttttatctcataagtcgaattatc |
13510272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 4446922 - 4446853
Alignment:
| Q |
11 |
cacagaacaattcaacatgatggatgatatggttgcggaagctttaggggtggaattgtcttacgatgaa |
80 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
4446922 |
cacagaacaattcaacatgatggatgatatggttgcggatgctttaggggtggaattgtcttacggtgaa |
4446853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 15742301 - 15742516
Alignment:
| Q |
18 |
caattcaacatgatggatgatatggttgcggaagctttaggggtggaattgtcttacgatgaagatgttgaagatgatgaagaggaacaacccccgaatg |
117 |
Q |
| |
|
||||||||||||||| |||||||||| || || |||||||| ||||||||||||||| |||| |||||||||||||| ||| ||| ||||||| |||| |
|
|
| T |
15742301 |
caattcaacatgatgaatgatatggtcgctgatgctttaggtgtggaattgtcttacaatgatgatgttgaagatgaacaaggtgaagaacccccaaatg |
15742400 |
T |
|
| Q |
118 |
agaaggcgcaaagattttaccgattgttgagtgaaagtaatacacctttgtatgaagggtcttcgtactctaagttatctatgtgtgtgtggcttttatc |
217 |
Q |
| |
|
|| | || ||||||||||||| |||||||||||| ||||| || ||| |||||||| | || | || |||||||| |||||||| | |||||| | |
|
|
| T |
15742401 |
agcaagcccaaagattttaccagttgttgagtgaatgtaatgtcccgctgtttgaagggtgtacgcaatcaaagttatcaatgtgtgtcagacttttagc |
15742500 |
T |
|
| Q |
218 |
tcataagtcgaattat |
233 |
Q |
| |
|
||||||| | |||||| |
|
|
| T |
15742501 |
tcataaggcaaattat |
15742516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 28953839 - 28954048
Alignment:
| Q |
15 |
gaacaattcaacatgatggatgatatggttgcggaagctttaggggtggaattgtcttacgatgaagatgttgaagatgatgaagaggaacaacccccga |
114 |
Q |
| |
|
|||||||||||||||||| |||||||||| || || |||||||| ||||||||||||||| || | || ||||||||||| ||| ||||||||||| | |
|
|
| T |
28953839 |
gaacaattcaacatgatgaatgatatggtcgctgatgctttaggtgtggaattgtcttacaataatgacgttgaagatgaacaaggcgaacaacccccaa |
28953938 |
T |
|
| Q |
115 |
atgagaaggcgcaaagattttaccgattgttgagtgaaagtaatacacctttgtatgaagggtcttcgtactctaagttatctatgtgtgtgtggctttt |
214 |
Q |
| |
|
||||| | || || ||||||||| ||||||| |||| ||||| || ||| |||||||| | || | || |||||||| |||||||| | ||||| |
|
|
| T |
28953939 |
atgagcaagcccagagattttacgagttgttgaatgaatgtaatgtcccactgtttgaagggtgtacgcaatcaaagttatcaatgtgtgtcagactttt |
28954038 |
T |
|
| Q |
215 |
atctcataag |
224 |
Q |
| |
|
| |||||||| |
|
|
| T |
28954039 |
agctcataag |
28954048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 59113 - 58827
Alignment:
| Q |
18 |
caattcaacatgatggatgatatggttgcggaagctttaggggtggaattgtcttacgatgaagatgttgaagatgatgaagaggaacaacccccgaatg |
117 |
Q |
| |
|
||||||||||||||| |||||||||| || || |||||||| ||||||||||||||| |||| |||||||||||||| ||| ||| ||||||| |||| |
|
|
| T |
59113 |
caattcaacatgatgaatgatatggtcgctgatgctttaggtgtggaattgtcttacaatgatgatgttgaagatgaacaaggtgaagaacccccaaatg |
59014 |
T |
|
| Q |
118 |
agaaggcgcaaagattttaccgattgttgagtgaaagtaatacacctttgtatgaagggtcttcgtactctaagttatctatgtgtgtgtggcttttatc |
217 |
Q |
| |
|
|| | || ||||||||||||| |||||||||||| ||||| || ||| |||||||| | || | || |||||||| || ||||| | |||||| | |
|
|
| T |
59013 |
agcaagcccaaagattttaccagttgttgagtgaatgtaatgtcccgctgtttgaagggtgtacgcaatcaaagttatcaatatgtgtcttacttttagc |
58914 |
T |
|
| Q |
218 |
tcataagtcgaattatcttaatcctgatgatggtatggatgatattacgaagatgttgaaggccgtgactccgttcaaagataattt |
304 |
Q |
| |
|
||||||| | |||||| | | ||||| | ||| ||||| | |||||| |||||||| || |||||||| || ||||||||||| |
|
|
| T |
58913 |
tcataaggcaaattatggtgtttctgataaaggtgtggattaaattacggagatgttgttggatgtgactccttttaaagataattt |
58827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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