View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_high_55 (Length: 314)
Name: NF4445_high_55
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_high_55 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 31717828 - 31717527
Alignment:
| Q |
1 |
aataggataccagttgtccgtctctactcttgttttcttcttaacacaatcagctcccactcgaacaatacaaatctgtcacgcagttttatataatata |
100 |
Q |
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| T |
31717828 |
aataggataccagttgtccgtctctactcttgttttcttcttaacacaatcagctcccactccaacaatacaaatctgtcacgcagttttatataatata |
31717729 |
T |
|
| Q |
101 |
atcaaactataagataaatgtacatgatcagccaaacgaatttagaaaatgatggacaagaattatcgaactgagtatttcaacaataaaattaagttgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31717728 |
atcaaactataagataaatgtacatgatcagccaaacgaatttagaaaatgatggacaagaattatcgaactgagtatttcaataataaaattaagttgt |
31717629 |
T |
|
| Q |
201 |
tcaacatgaaaatattcattcatgccatgaaactacttaatttccttttagtaaaatgattaagagcacactacactcac----ttctaatatttccttc |
296 |
Q |
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| T |
31717628 |
tcaacatgaaaatattcattcatgccatgaaactacttaatttccttttagtaaaatgattaagagcacactacactcacttaattctaatatttccttc |
31717529 |
T |
|
| Q |
297 |
ac |
298 |
Q |
| |
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|| |
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|
| T |
31717528 |
ac |
31717527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 31654245 - 31654168
Alignment:
| Q |
4 |
aggataccagttgtccgtctctactcttgttttcttcttaacacaatcagctcccactcgaacaatacaaatctgtca |
81 |
Q |
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||||||||| |||||| ||| ||| ||||||||| |||| |||| |||||||||||||| | ||||||||| |||||| |
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| T |
31654245 |
aggataccaattgtccatctttacacttgttttcatcttcacactatcagctcccactccagcaatacaaacctgtca |
31654168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 31704612 - 31704522
Alignment:
| Q |
5 |
ggataccagttgtccgtctctactcttgttttcttcttaacacaatcagctcccactcgaacaatacaaatctgtcacgcagttttatata |
95 |
Q |
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|||| ||| |||||| ||| ||| |||||||||||||| |||||||||||| ||||| | ||||| ||| ||||||| |||||| |||| |
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| T |
31704612 |
ggattccaattgtccatctttacacttgttttcttcttggcacaatcagctctcactccagcaatagaaacctgtcacatagttttgtata |
31704522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 264
Target Start/End: Original strand, 53918985 - 53919014
Alignment:
| Q |
235 |
acttaatttccttttagtaaaatgattaag |
264 |
Q |
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| T |
53918985 |
acttaatttccttttagtaaaatgattaag |
53919014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 166
Target Start/End: Original strand, 44901426 - 44901563
Alignment:
| Q |
29 |
cttgttttcttcttaacacaatcagctcccactcgaacaatacaaatctgtcacgcagttttatataatataatcaaactataagat-aaatgtacatga |
127 |
Q |
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|||||||||||||| |||| ||||||||||||| ||||||||||| ||||||| || ||||||| ||| | ||||||||||||||| ||||||||| || |
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| T |
44901426 |
cttgttttcttctt--cacagtcagctcccactccaacaatacaaacctgtcacacaattttatacaatttgatcaaactataagataaaatgtacagga |
44901523 |
T |
|
| Q |
128 |
tcagccaaacgaatttagaaaatg-atggacaagaattat |
166 |
Q |
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||||||||| |||||||||||| |||||||||||||| |
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|
| T |
44901524 |
tcagccaaatagatttagaaaatgtgtggacaagaattat |
44901563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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