View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_high_61 (Length: 311)
Name: NF4445_high_61
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_high_61 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 21 - 311
Target Start/End: Complemental strand, 46777912 - 46777612
Alignment:
| Q |
21 |
acgtataccacacaagaggggaaaagaaaagaggaatttcatttcttannnnnnnactcagcccagtaagaagtttggtattgtagtttcgaacgatcat |
120 |
Q |
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| T |
46777912 |
acgtataccacacaagaggggaaaagaaaagaggaatttcatttcttatttttttactcagtcaagtaagaagtttggtattgtagtttcgaacgatcat |
46777813 |
T |
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| Q |
121 |
tgtaaaatgttgattgatgttactttaattaataacgatttctcgtaatttttttgttgttgaannnnnnnncaactttaaataatttatatc------- |
213 |
Q |
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| T |
46777812 |
tgtaaaatgttgattgatgttactttaattaataacaatttctcgtaaattttttgttgttgaattttttttcgactttaaataatttatatcaatagtg |
46777713 |
T |
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| Q |
214 |
---tatagtaagaattgagaagnnnnnnnnttaacgaaaatcaagcattttccaatcaataatacaagagagagatacactgatgctatccaaatataga |
310 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
46777712 |
ctttatagtaagaattgagaagaaatttttttatcgaaaatcaagcattttccaatcagtaatacaagagagagatacactgatgctatccaaatataga |
46777613 |
T |
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| Q |
311 |
a |
311 |
Q |
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| T |
46777612 |
a |
46777612 |
T |
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