View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_high_62 (Length: 309)
Name: NF4445_high_62
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_high_62 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 48730685 - 48730965
Alignment:
| Q |
18 |
aggtactagaattttctgcagaagccaggagcttgaatggcagcatgaagctacatggtccattactgatggtgcaattggaatcaaaagtttcaaggaa |
117 |
Q |
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| T |
48730685 |
aggtactagaattttctgcagaagccagaagcttgaatggcagaatgaagctacatggtccattactgatagtgcaattggaagcaaaagtttcaaggaa |
48730784 |
T |
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| Q |
118 |
atggtgtctacctcaaagcacagagctgaggtaacaacaccaaggacaccaacaaggatgtgggttagctcagaagttccattattaccttatgctaaat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48730785 |
atggtgtctacctcaaagcacagagctgaggtaacaacaccaaggacaccaactaggatgtgggttagctcagaagttccattattaccttatgctaaat |
48730884 |
T |
|
| Q |
218 |
ggttttttcttttaaggcatgtaagtagaattctctattggcttcaacttatttctgcaacagctagtgtggttctctcat |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48730885 |
ggttttttcttttaaggcatgtaagtagaattctctattggcttcaacttatttctgcaacagctagtgtggttctctcat |
48730965 |
T |
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