View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4445_high_64 (Length: 304)

Name: NF4445_high_64
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4445_high_64
NF4445_high_64
[»] scaffold0164 (1 HSPs)
scaffold0164 (1-287)||(2309-2595)


Alignment Details
Target: scaffold0164 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 2309 - 2595
Alignment:
Q  1 tcttgaggtcacctttccggcgtggacctttaaagcttcaccatggtttgtccatggccgttcatggtgaatcttgattcagcgatggaaaaacccttag 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2309 tcttgaggtcacctttccggcgaggacctttaaagcttcaccatggtttgtccatggccgttcatggtgaatcttgattcagcgatggaaaaacccttag 2408  T
Q  101 aacaaacaatgaaatcgaaagttacgagcaaatccttcgctcaaatcctctccggcgaagatcctgatgcttccctcctggctcagcctcctctcaaagt 200  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  2409 aacaaacaatgaaatcgaaagttacgagcaaatccttcactcaaatcctctccggcgaagatcctgagtcttccctcctggctcagcctcctctcaaagt 2508  T
Q  201 ggttatgagcaacgcagttcgtgtgaaaatttctcgagcttcctatgaggttggcctagcagcgtgcaaaactcacctccatggaag 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2509 ggttatgagcaacgcagttcgtgtgaaaatttctcgagcttcctatgaggttggcctagcagcgtgcaaaactcacctccatggaag 2595  T

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