View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4445_high_7 (Length: 659)

Name: NF4445_high_7
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4445_high_7
NF4445_high_7
[»] chr1 (1 HSPs)
chr1 (9-646)||(40834956-40835605)


Alignment Details
Target: chr1 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 9 - 646
Target Start/End: Complemental strand, 40835605 - 40834956
Alignment:
Q  9 agcagagataaatttcaagaaagattggatttcaagttctatgatttcaaggctcttgaggtttttctcttactctcactctctctc--------acaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||        |||||    
T  40835605 agcagagataaatttcaagaaagattggatttcaagttctatgatttcaaggctcttgaggtttttctcttagtctcactctctctctctctctcacaat 40835506  T
Q  101 aatggtcatttttacaattatctaataaagttattttggcaccttcatttccatgatcaaaatatggtagtaattgttgaatgtttcttttttctggatg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  40835505 aatggtcatttttacaattatctaataaagttattttggcaccttcatttccatgatcaaaatatggtagtaattgttgaatgtttcttttttctggata 40835406  T
Q  201 tgatgattgtgattttgtcacatttcaaatttagtaatcatattgtctataaaatttatttatttatgatgatgcagattgaaaaagggtggaaccagct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40835405 tgatgattgtgattttgtcacatttcaaatttagtaatcatattgtctatacaatttatttatttatgatgatgcagattgaaaaagggtggaaccagct 40835306  T
Q  301 ttttgtttctattatttgtatagaaactggggaaaccatagccaagtctggcaaagcattagtaaaaaatggagagtgtgattgggaagactctatgtta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40835305 ttttgtttctattatttgtatagaaactggggaaaccatagccaagtctggcaaagcattagtaaaaaatggagagtgtgattgggaagactctatgtta 40835206  T
Q  401 agtaccatttggatttctgattattctctacaagctaatcaagcctgcctccttaagcttcttgtagcaatggtttgtttttgttcataaaacttcacat 500  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40835205 agtaccatttggatttctgattattctctacaagataatcaagcctgccttcttaagcttcttgtagcaatggtttgtttttgttcataaaacttcacat 40835106  T
Q  501 tttcttttatnnnnnnnnnnnnnncaacttcaaaaatagaaggaacactaaatatattctgaaatgag-----tcgtatggctttgtgataatgcaggga 595  Q
    |||||||| |              ||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||    
T  40835105 tttcttttgt-aaaaaagaaaaaacaacttcaaaaatagaaggaacactaaatatattctgaaatgagtcgtatcgtatggctttgtgataatgcaggga 40835007  T
Q  596 tctcccaggtttgggacccttggcgaagctaccattaatttatcaagttac 646  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40835006 tctcccaggtttgggacccttggcgaagctaccattaatttatcaagttac 40834956  T

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