View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_high_72 (Length: 297)
Name: NF4445_high_72
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_high_72 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 10 - 280
Target Start/End: Complemental strand, 5719740 - 5719470
Alignment:
| Q |
10 |
caatgagactcccaaaaaagtccaatcccagaaactnnnnnnntaaagttactccaatcaacttaaccaggaaaatgaaaactacaacaattgatttcaa |
109 |
Q |
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| T |
5719740 |
caatgagactcccaaaaaagtccaatcccagaaactaaaaaaataaagttactccaatcaacttaaccaggaaaatgaaaactacaacaattgatttcaa |
5719641 |
T |
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| Q |
110 |
ttctttccgttccattttccaccatccaaacacgatcaatgtcagacttcaataaaaccagtcatcctaagaatcgaattcctaaccctgctcaaatccc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5719640 |
ttctttccgttccattttccaccatccaaacacgatcaatgtcagacttcaataaaaccagtcatcctaagaatcgaattcctaaccctgctcaaatccc |
5719541 |
T |
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| Q |
210 |
ttcccttcaaagtcctcccatgcccagaacacatggaaaatgtcatttttccagctagcctccgcgccata |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5719540 |
ttcccttcaaagtcctcccatgcccagaacacatggaaaatgtcatttttccagctagcctccgcgccata |
5719470 |
T |
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