View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_high_80 (Length: 283)
Name: NF4445_high_80
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_high_80 |
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Alignment Details
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 121
Target Start/End: Original strand, 10408289 - 10408367
Alignment:
| Q |
43 |
gggtgcgggtgtatatcaaccctaaaagctttcaaggtgatgaattcagttatgctgataacagttgcatgtcttgtgt |
121 |
Q |
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| T |
10408289 |
gggtgagggtgtatatcaaccctaaaagctttcaaggtgatgaattcagttatgctgataacagttgcatgtcttgtgt |
10408367 |
T |
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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 182 - 265
Target Start/End: Original strand, 10408410 - 10408493
Alignment:
| Q |
182 |
ttgaattataaactttcttcattctaatgcttggattgtgtctatgtggcatatctatagaaactcctcattctctattaaaat |
265 |
Q |
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| T |
10408410 |
ttgaattagaaacttgcatcattttaatgcttggattgtgtctatgtggcatatctatagaaactcctcattctctattaaaat |
10408493 |
T |
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Target: chr1; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 43 - 121
Target Start/End: Original strand, 10391547 - 10391625
Alignment:
| Q |
43 |
gggtgcgggtgtatatcaaccctaaaagctttcaaggtgatgaattcagttatgctgataacagttgcatgtcttgtgt |
121 |
Q |
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| T |
10391547 |
gggtgggggtgtatatcaaccctaagagctttcaaggtgatgaattcagttatgctgataacagttgcatgtcatgtgt |
10391625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 10403070 - 10403134
Alignment:
| Q |
57 |
atcaaccctaaaagctttcaaggtgatgaattcagttatgctgataacagttgcatgtcttgtgt |
121 |
Q |
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| T |
10403070 |
atcaaccctaatagctttcaaggtgatgaattcagtcattctgataacagttgcatgtcttgtgt |
10403134 |
T |
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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 51169038 - 51168994
Alignment:
| Q |
182 |
ttgaattataaactttcttcattctaatgcttggattgtgtctat |
226 |
Q |
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| T |
51169038 |
ttgaattagaaacttgcttcattctaatgcttggattgtgcctat |
51168994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 9580085 - 9580138
Alignment:
| Q |
182 |
ttgaattataaactttcttcattctaatgcttggattgtgtctatgtggcatat |
235 |
Q |
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| T |
9580085 |
ttgaatttgaaacttgcttcattctaatgcttggattgtgcctatgtgacatat |
9580138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 9585780 - 9585833
Alignment:
| Q |
182 |
ttgaattataaactttcttcattctaatgcttggattgtgtctatgtggcatat |
235 |
Q |
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| T |
9585780 |
ttgaatttgaaacttgcttcattctaatgcttggattgtgcctatgtgacatat |
9585833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 9366669 - 9366716
Alignment:
| Q |
182 |
ttgaattataaactttcttcattctaatgcttggattgtgtctatgtg |
229 |
Q |
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| T |
9366669 |
ttgaattagaaacttgtttcattctaatgcttggattgtgcctatgtg |
9366716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 232
Target Start/End: Original strand, 29902739 - 29902789
Alignment:
| Q |
182 |
ttgaattataaactttcttcattctaatgcttggattgtgtctatgtggca |
232 |
Q |
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| T |
29902739 |
ttgaatttgaaacttgcttcattctaatgtttggattgtgcctatgtggca |
29902789 |
T |
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