View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4445_low_1 (Length: 880)

Name: NF4445_low_1
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4445_low_1
NF4445_low_1
[»] chr3 (5 HSPs)
chr3 (9-861)||(24830004-24830860)
chr3 (131-690)||(23246234-23246790)
chr3 (722-796)||(23246153-23246227)
chr3 (9-80)||(23248273-23248350)
chr3 (131-240)||(36060268-36060377)
[»] chr6 (4 HSPs)
chr6 (128-256)||(9193904-9194029)
chr6 (131-166)||(31322127-31322162)
chr6 (125-171)||(1912524-1912570)
chr6 (135-186)||(14933031-14933079)
[»] chr5 (2 HSPs)
chr5 (131-171)||(34114370-34114410)
chr5 (124-240)||(40213841-40213953)
[»] chr8 (1 HSPs)
chr8 (136-249)||(16690915-16691025)
[»] chr2 (1 HSPs)
chr2 (124-171)||(11530025-11530072)
[»] chr1 (2 HSPs)
chr1 (131-240)||(7347696-7347802)
chr1 (131-169)||(32868273-32868311)
[»] chr4 (1 HSPs)
chr4 (131-169)||(20709976-20710014)


Alignment Details
Target: chr3 (Bit Score: 696; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 696; E-Value: 0
Query Start/End: Original strand, 9 - 861
Target Start/End: Original strand, 24830004 - 24830860
Alignment:
Q  9 acatcatcatattgcactttcagttgtttccgagctac--------------aattgtacacctgaaccaacaatctcggataccaaggttaagtcacat 94  Q
    ||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||| ||| |||||||||||||||||    
T  24830004 acatcatcatattgcactttcagttgtttccgagctacctgtagtcctgtacaattgtacacctgaaccaacaatctcagatgccaaggttaagtcacat 24830103  T
Q  95 ttatagtggcgctttagtgctacaacattgcgaaagttgaacaaatcgctattgttctacaatacactatttagtactataaaatgttgtcaactaaagg 194  Q
    ||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||   |||||||||||||| ||||||    
T  24830104 ttatactggcactttagtgctacaacattgcgaaagttgaaaaaatcgctattgttctacaatacactatttagta---taaaatgttgtcaaataaagg 24830200  T
Q  195 ctatatcggcgctatagtactcttgtgtagcaaaatttgaacaaactgttgttttccacgatagacaacactgcaatgaacaaagcagttatatatggca 294  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  24830201 ctatatcggcgctatagcactcttgtgtagcaaaatttgaacaaactgttgttttccgtgatagacaacactgcaatgaacaaagcagttatatatggca 24830300  T
Q  295 acaactgatcagatcagaaatacgaaatatcaacttaccacttctatcttcccggagatgctgctttgatagcatcgacgtcagccaatcaaccacctct 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  24830301 acaactgatcagatcagaaatacgaaatatcaacttaccacttctatcttcccggagatgctgctttgatagcatcgatgtcggccaatcaaccacctct 24830400  T
Q  395 tttctagatctccatttgaaaccaggtagaatttctatcccgcaaatttccaggaactccttggaaacaacattgcacatgtgtctaacactcctctcag 494  Q
     |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  24830401 cttctagatctccatttgaaaccaggtagaatttccatcctgcaaatttccaggaactccttggaaacaacattgcacatgtgtctaacactcctctcac 24830500  T
Q  495 agtgcctacaactgcaaggaatgattcaccaacataatcttttaggtagtagtgaaagatatgatggcacactcttgtgaagcaaaatgttctttcattt 594  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24830501 agtgcctacaactgcaaggaatgattcaccaacataatcttttaggtagtagtgaaagatatgatggcacactcttgtgaagcaaaatgttctttcattt 24830600  T
Q  595 ccacaaaacacggatcgtctaccaacatcataaagagaataccaacgccaaatttgcacttgatgtcaaaacagttgtataggatccaacctagacacat 694  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24830601 ccacaaaacacggatcgtctaccaacatcataaagagaataccaacgccaaatttgcacttgatgtcaaaaaagttgtataggatccaacctagacacat 24830700  T
Q  695 ttgtaggcacggtaagaggagtgttaattcatttgtgacaaagtaacaacctttatagcataccatcatcatgaaaaacaattaaccctcttaaaaacct 794  Q
    ||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24830701 ttgtaggcacggtaagaagagtgttaattcctttgtcacaaagtaacaacctttatagcataccatcatcatgaaaaacaaataaccctcttaaaaacct 24830800  T
Q  795 taatcaccttacacagatgcttacaacataaaattaaccagaagcctcaaaatcgcggtgcaatcgg 861  Q
    ||||||||||||||       |||||||||||| |||||||||||||||||||||||||||||||||    
T  24830801 taatcaccttacac-------tacaacataaaactaaccagaagcctcaaaatcgcggtgcaatcgg 24830860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 131 - 690
Target Start/End: Complemental strand, 23246790 - 23246234
Alignment:
Q  131 ttgaacaaatcgctattgttctacaatacactatttagtactataaaatgttgtcaactaaaggctatatcggcgctatagtactcttgtgtagcaaaat 230  Q
    ||||||||||| | ||||||| |||||||||||||||||    ||||||| || ||| || |||||| | || | |||||  |||  || |||||| |||    
T  23246790 ttgaacaaatcaccattgttccacaatacactatttagtg---taaaatgatggcaaatagaggctacagcg-cactataacactgatgcgtagcagaat 23246695  T
Q  231 ttgaacaaactgttgttttccacgatagacaacactgcaatgaacaaagcagttatatatggcaacaactgatcagatcag---aaatacgaaatatcaa 327  Q
    ||||| |||||||| |||| |||| | ||||||||| |||||| |||   | ||||||||||| |||||||||  ||||||   ||||| |||| ||| |    
T  23246694 ttgaataaactgttctttttcacgcttgacaacactacaatgatcaacataattatatatggcgacaactgattcgatcagtagaaataagaaacatcga 23246595  T
Q  328 cttaccacttctatcttcccggagatgctgctttgatagcatcgacgtcagccaatcaaccacctcttttctagatctccatttgaaaccaggtagaatt 427  Q
    |||||||||||||||||||   |||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  23246594 cttaccacttctatcttcctccagatgctgctttgataacatcgaggtcagccaatcaaccacctctcttctagatctccatttgaaaccaggtggaatt 23246495  T
Q  428 tctatcccgcaaatttccaggaactccttggaaacaacattgcacatgtgtctaacactcctctcagagtgcctacaactgcaaggaatgattcaccaac 527  Q
    || || || |||||||||| ||||||||  | || ||||| ||||||||||||||||||||||||  |||||| ||||||||||| || || || ||| |    
T  23246494 tccattccacaaatttccaagaactcctctgcaataacatagcacatgtgtctaacactcctctc--agtgccgacaactgcaagaaaggactccccagc 23246397  T
Q  528 ataatcttttaggtagtagtgaaagatatgatgg-cacactcttgtgaagcaaaatgttctttcatttccacaaaacacggatcgtctaccaacatcata 626  Q
    | | || |||||||| |||||||  ||| ||||| ||| |||||||||| ||||||| ||||||  ||||||||||||||||||||||| | ||||| ||    
T  23246396 agagtcctttaggtaatagtgaactatacgatggccacgctcttgtgaaacaaaatgctctttccattccacaaaacacggatcgtctatcgacatctta 23246297  T
Q  627 aagagaataccaacgccaaatttgcacttgatgtcaaaacagttgtataggatccaacctagac 690  Q
    |||||||||||||| | | |  | |||||||| |||||| ||| ||||||| ||||| ||||||    
T  23246296 aagagaataccaacactagacatacacttgatttcaaaa-agtagtatagggtccaatctagac 23246234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 722 - 796
Target Start/End: Complemental strand, 23246227 - 23246153
Alignment:
Q  722 ttcatttgtgacaaagtaacaacctttatagcataccatcatcatg-aaaaacaattaaccctcttaaaaacctta 796  Q
    ||||||||| ||||||||||||||||   || |||||| ||||||| |||||||||||||||||| ||||||||||    
T  23246227 ttcatttgtcacaaagtaacaaccttgc-agtataccaacatcatggaaaaacaattaaccctctaaaaaacctta 23246153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 23248350 - 23248273
Alignment:
Q  9 acatcatcatattgcactttcagttgtttccgagc------tacaattgtacacctgaaccaacaatctcggatacca 80  Q
    |||||||||||||| ||||||| ||||||||||||      ||||||||||||||||||||| ||  |||||||||||    
T  23248350 acatcatcatattggactttcaattgtttccgagctacctgtacaattgtacacctgaaccagcagcctcggatacca 23248273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 240
Target Start/End: Original strand, 36060268 - 36060377
Alignment:
Q  131 ttgaacaaatcgctattgttctacaatacactatttagtactataaaatgttgtcaactaaaggc---tatatcggcgctatagtactcttgtgtagcaa 227  Q
    |||||||||||||  |||||| |||||||  ||||||||||   ||||| |||| || || ||||   ||||| |||||||||||||| |||  ||||||    
T  36060268 ttgaacaaatcgcatttgttccacaatacgttatttagtac---aaaatattgtgaaatagaggcggctatataggcgctatagtactgttgcatagcaa 36060364  T
Q  228 aatttgaacaaac 240  Q
    |||||||||||||    
T  36060365 aatttgaacaaac 36060377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 9194029 - 9193904
Alignment:
Q  128 aagttgaacaaatcgctattgttctacaatacactatttagtactataaaatgttgtcaactaaaggctatatcggcgctatagtactcttgtgtagcaa 227  Q
    |||||||||||||| || || ||| |||||||| ||||| ||||   ||||||||||  | ||  |||||||||||| |||||||||| ||  ||||||     
T  9194029 aagttgaacaaatcactgttcttccacaatacattatttggtac---aaaatgttgttcaatagtggctatatcggctctatagtactgttcagtagcag 9193933  T
Q  228 aatttgaacaaactgttgttttccacgat 256  Q
    |||||||||||| ||||||||||||||||    
T  9193932 aatttgaacaaattgttgttttccacgat 9193904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 166
Target Start/End: Original strand, 31322127 - 31322162
Alignment:
Q  131 ttgaacaaatcgctattgttctacaatacactattt 166  Q
    |||||||||||| |||||||||||||||||||||||    
T  31322127 ttgaacaaatcgttattgttctacaatacactattt 31322162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 1912570 - 1912524
Alignment:
Q  125 cgaaagttgaacaaatcgctattgttctacaatacactatttagtac 171  Q
    ||||| |||||||||||||||||||||| | ||| ||||||||||||    
T  1912570 cgaaatttgaacaaatcgctattgttctgcgatatactatttagtac 1912524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 14933079 - 14933031
Alignment:
Q  135 acaaatcgctattgttctacaatacactatttagtactataaaatgttgtca 186  Q
    ||||| |||||||||||| ||||||||||||||||||   ||||||||||||    
T  14933079 acaaaccgctattgttctgcaatacactatttagtac---aaaatgttgtca 14933031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 34114370 - 34114410
Alignment:
Q  131 ttgaacaaatcgctattgttctacaatacactatttagtac 171  Q
    ||||||||||||||||||||| ||||||| |||||||||||    
T  34114370 ttgaacaaatcgctattgttccacaatacgctatttagtac 34114410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 240
Target Start/End: Complemental strand, 40213953 - 40213841
Alignment:
Q  124 gcgaaagttgaacaaatcgctattgttctacaatacactatttagtactataaaatgttgtcaactaaaggctatatcggcgctatagtactcttgtgta 223  Q
    |||||| ||||||||||| |||||||||  |||||| |||| ||||||   ||||||||||||| |    ||||||| || ||||||| ||| ||| |||    
T  40213953 gcgaaaattgaacaaatcactattgttcg-caatacgctatgtagtac---aaaatgttgtcaaatggtagctatattggtgctatagcactgttgcgta 40213858  T
Q  224 gcaaaatttgaacaaac 240  Q
    ||||||||| |||||||    
T  40213857 gcaaaatttaaacaaac 40213841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 249
Target Start/End: Complemental strand, 16691025 - 16690915
Alignment:
Q  136 caaatcgctattgttctacaatacactatttagtactataaaatgttgtcaactaaaggctatatcggcgctatagtactcttgtgtagcaaaatttgaa 235  Q
    |||||||||||||||||   | ||||| ||||||||   |||||||| |||| || ||| |||| |||| |||||| ||| ||| | ||| |||||||||    
T  16691025 caaatcgctattgttctgttacacactgtttagtac---aaaatgttttcaaatagagggtataacggcactatagcactgttgcgaagcgaaatttgaa 16690929  T
Q  236 caaactgttgtttt 249  Q
    ||||||||| ||||    
T  16690928 caaactgttatttt 16690915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 171
Target Start/End: Original strand, 11530025 - 11530072
Alignment:
Q  124 gcgaaagttgaacaaatcgctattgttctacaatacactatttagtac 171  Q
    |||||| ||||||||||| |||||||||| | ||||||||||||||||    
T  11530025 gcgaaatttgaacaaatcactattgttctgcgatacactatttagtac 11530072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 240
Target Start/End: Original strand, 7347696 - 7347802
Alignment:
Q  131 ttgaacaaatcgctattgttctacaatacactatttagtactataaaatgttgtcaactaaaggctatatcggcgctatagtactcttgtgtagcaaaat 230  Q
    |||||||||| ||||||||| | ||||||||||||||||||   ||||| |||| || ||  |||||||  |||||||||||||| ||| |||    |||    
T  7347696 ttgaacaaattgctattgttttgcaatacactatttagtac---aaaatattgtgaaatagcggctatagaggcgctatagtactgttgcgtaatgtaat 7347792  T
Q  231 ttgaacaaac 240  Q
    ||||||||||    
T  7347793 ttgaacaaac 7347802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 32868273 - 32868311
Alignment:
Q  131 ttgaacaaatcgctattgttctacaatacactatttagt 169  Q
    |||||||||||||||||||||| ||||| ||||||||||    
T  32868273 ttgaacaaatcgctattgttctgcaatatactatttagt 32868311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 20710014 - 20709976
Alignment:
Q  131 ttgaacaaatcgctattgttctacaatacactatttagt 169  Q
    |||||||||||||||||||||| |||||| |||||||||    
T  20710014 ttgaacaaatcgctattgttctgcaatacgctatttagt 20709976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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