View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4445_low_10 (Length: 645)
Name: NF4445_low_10
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_10 |
 | |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 564; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 9 - 626
Target Start/End: Complemental strand, 6350183 - 6349565
Alignment:
| Q |
9 |
acatcatcatcagcattaccatcaacatcatcttcagcatcagacgaactatgatgttcttcatcctcatataaatcatctgtgtattctacttcactgg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
6350183 |
acatcatcatcagcattaccatcaacatcatcttcagcatcagacgaactatgatgttcttcatcctcgtataaatcatctgtgtattctacttcactgg |
6350084 |
T |
|
| Q |
109 |
aatcggcgtccaaacaatctttgtggtgttccatgacaaccctaaaatttcgaaaattttaacaaagcatgagttttatttttaaacagcatactattat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6350083 |
aatcggcgtccaaacaatctttgtggtgttccatgacaaccctaaaatttcgaaaattttaacaaagcatgagttttatttttaaacagcatactattat |
6349984 |
T |
|
| Q |
209 |
attattgcaagcaaaaccatcttcctaatacaagaaaaaccatcttcctaagacaagaaagaggtgctaggaaaacaaacaaaaaccccagtgtatatgt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6349983 |
attattgcaagcaaaaccatcttcctaatacaagaaaaaccatcttcctaagacaagaaagaggtgctaggaaaacaaacaaaaaccccagtgtatatgt |
6349884 |
T |
|
| Q |
309 |
tacagggccacccaaatgtacacataaacaacatcacacaaaatggaaacaaatacatattggggtcttaagaaaatattttaactttgaataaatacta |
408 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
6349883 |
tacagggccacccaaatgtacacataagcagcatcacacaaaatggaaacaaatacatattggggtcttaagcaaatattttaactttgaataaatacta |
6349784 |
T |
|
| Q |
409 |
actttctgtgtattagtcaagttgtctattacaatcttgaaaattgtctttggtataaccaagtgacattaggttttaggtccctaaatgccaacgtaat |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6349783 |
actttctgtgtattagtcaagttgtctattacaatcttgaaaattgtctttggtataaccgagtgacattaggttttaggtccctaaatgccaacgtaat |
6349684 |
T |
|
| Q |
509 |
tgttgcctccgatactaatcaagtatataacatcattgaaaacc-nnnnnnnnngttataacctagtgtctgctttaataactacactacatccttgtag |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6349683 |
tgttgcctccgatactaatcaagtatataacatcattgaaaaccttttttttttgttataacctagtgtctgctttaataactacactacatccttgtag |
6349584 |
T |
|
| Q |
608 |
tagctcaattgtgttagaa |
626 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
6349583 |
tagctcaattgtgttagaa |
6349565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 9 - 156
Target Start/End: Complemental strand, 7555485 - 7555338
Alignment:
| Q |
9 |
acatcatcatcagcattaccatcaacatcatcttcagcatcagacgaactatgatgttcttcatcctcatataaatcatctgtgtattctacttcactgg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
7555485 |
acatcatcatcagcattaccatcaacatcatcttcagcatcaaacgaactatgatgttcttcatcctctattaaatcatctgtgtattctacttcactgg |
7555386 |
T |
|
| Q |
109 |
aatcggcgtccaaacaatctttgtggtgttccatgacaaccctaaaat |
156 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7555385 |
aatcaacatccaaacaatctttgtggtgttccatgacaaccttaaaat |
7555338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 239 - 361
Target Start/End: Complemental strand, 7555209 - 7555086
Alignment:
| Q |
239 |
caagaaaaaccatcttcctaagacaagaaaga-ggtgctaggaaaacaaacaaaaaccccagtgtatatgttacagggccacccaaatgtacacataaac |
337 |
Q |
| |
|
|||| |||||||||||| |||||||||||||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7555209 |
caagcaaaaccatcttcttaagacaagaaagaaggtgctaggaaaacaaacaaaaactccagcgtatattatacagggccacccaaatgtacacataaac |
7555110 |
T |
|
| Q |
338 |
aacatcacacaaaatggaaacaaa |
361 |
Q |
| |
|
| || ||||||||||||||||||| |
|
|
| T |
7555109 |
agcaacacacaaaatggaaacaaa |
7555086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 245
Target Start/End: Complemental strand, 7555219 - 7555180
Alignment:
| Q |
206 |
tatattattgcaagcaaaaccatcttcctaatacaagaaa |
245 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
7555219 |
tatattattgcaagcaaaaccatcttcttaagacaagaaa |
7555180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 9 - 208
Target Start/End: Complemental strand, 24223052 - 24222852
Alignment:
| Q |
9 |
acatcatcatcagcattaccatcaacatcatcttcagcatcagacgaactatgatgttcttcatcctcatataaatcatctgtgtattctacttcactgg |
108 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
24223052 |
acatcatcatcagcatcaccatcaacatcatctttagcatcagacgaaatatgatgttcttcatcctcatataaatcatatgtgtattctacttcagtgg |
24222953 |
T |
|
| Q |
109 |
aatcggcgtccaaacaatctttgtggtgttccatgacaaccctaaaatttcgaaaattttaacaaagcatgagt-tttatttttaaacagcatactatta |
207 |
Q |
| |
|
||||||||||||| ||||||| |||||||||| |||||||| |||||||||||||||||||||||||||| ||| || |||||||||| |||| ||||| |
|
|
| T |
24222952 |
aatcggcgtccaaccaatcttcgtggtgttccttgacaaccttaaaatttcgaaaattttaacaaagcataagtacttttttttaaacaacataatatta |
24222853 |
T |
|
| Q |
208 |
t |
208 |
Q |
| |
|
| |
|
|
| T |
24222852 |
t |
24222852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 4e-61; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 9 - 156
Target Start/End: Complemental strand, 25515698 - 25515551
Alignment:
| Q |
9 |
acatcatcatcagcattaccatcaacatcatcttcagcatcagacgaactatgatgttcttcatcctcatataaatcatctgtgtattctacttcactgg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||| ||||||||| |
|
|
| T |
25515698 |
acatcatcatcagcattaccatcaacatcatcttcagcatcatacgaactatgatgttcttcatcatctattaaatcatctgtgtattcttcttcactgg |
25515599 |
T |
|
| Q |
109 |
aatcggcgtccaaacaatctttgtggtgttccatgacaaccctaaaat |
156 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25515598 |
aattggcgtccaaacaatctttgtggtgttccatgacaaccctaaaat |
25515551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 9 - 156
Target Start/End: Original strand, 8775216 - 8775360
Alignment:
| Q |
9 |
acatcatcatcagcattaccatcaacatcatcttcagcatcagacgaactatgatgttcttcatcctcatataaatcatctgtgtattctacttcactgg |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||| ||||||||| |
|
|
| T |
8775216 |
acatcatcatcagcattaccatcaacatcatcttcagcatcagacgaactatgatgttcttcatct--at-taaaccatctgtgtattcttcttcactgg |
8775312 |
T |
|
| Q |
109 |
aatcggcgtccaaacaatctttgtggtgttccatgacaaccctaaaat |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8775313 |
aatcggcgtccaaacaatctttgtggtgttccatgacaaccctaaaat |
8775360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 9 - 156
Target Start/End: Original strand, 25519661 - 25519808
Alignment:
| Q |
9 |
acatcatcatcagcattaccatcaacatcatcttcagcatcagacgaactatgatgttcttcatcctcatataaatcatctgtgtattctacttcactgg |
108 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||| || |
|
|
| T |
25519661 |
acatcatcattagcattaccattaacatcatcttcagcatcagacgaactatgatgttcttcatcatctattaaatcatctgtgtattcttcttcacagg |
25519760 |
T |
|
| Q |
109 |
aatcggcgtccaaacaatctttgtggtgttccatgacaaccctaaaat |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25519761 |
aatcggcgtccaaacaatctttgtggtgttccatgacaaccctaaaat |
25519808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 239 - 286
Target Start/End: Complemental strand, 25515408 - 25515360
Alignment:
| Q |
239 |
caagaaaaaccatcttcctaagacaagaaag-aggtgctaggaaaacaa |
286 |
Q |
| |
|
|||| |||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
25515408 |
caagcaaaaccatcttcttaagacaagaaagaaggtgctaggaaaacaa |
25515360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 245
Target Start/End: Complemental strand, 25515418 - 25515379
Alignment:
| Q |
206 |
tatattattgcaagcaaaaccatcttcctaatacaagaaa |
245 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
25515418 |
tatattattgcaagcaaaaccatcttcttaagacaagaaa |
25515379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 245
Target Start/End: Original strand, 25519956 - 25519995
Alignment:
| Q |
206 |
tatattattgcaagcaaaaccatcttcctaatacaagaaa |
245 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
25519956 |
tatattattgcaagcaaaaccatcttcttaagacaagaaa |
25519995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 239 - 286
Target Start/End: Original strand, 25519966 - 25520014
Alignment:
| Q |
239 |
caagaaaaaccatcttcctaagacaagaaag-aggtgctaggaaaacaa |
286 |
Q |
| |
|
|||| |||||||||||| ||||||||||||| |||||||| |||||||| |
|
|
| T |
25519966 |
caagcaaaaccatcttcttaagacaagaaagaaggtgctatgaaaacaa |
25520014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 111; Significance: 1e-55; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 363 - 525
Target Start/End: Complemental strand, 418130 - 417969
Alignment:
| Q |
363 |
acatattggggtcttaagaaaatattttaactttgaataaatactaactttctgtgtattagtcaagttgtctattacaatcttgaaaattgtctttggt |
462 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
418130 |
acatattggggtcttaagcaaatattttaactttgaataaatactaacattctgtgtattagtcaaattgtctattacgatcttgaaaattgtctttggt |
418031 |
T |
|
| Q |
463 |
ataaccaagtgacattaggttttaggtccctaaatgccaacgtaattgttgcctccgatacta |
525 |
Q |
| |
|
|||||| |||||||||||||||||||| | |||||||| ||||||||||||| | |||||| |
|
|
| T |
418030 |
ataaccgagtgacattaggttttaggt-tgtgaatgccaaagtaattgttgcctgcaatacta |
417969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 562 - 626
Target Start/End: Complemental strand, 417866 - 417802
Alignment:
| Q |
562 |
gttataacctagtgtctgctttaataactacactacatccttgtagtagctcaattgtgttagaa |
626 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
417866 |
gttataacctagtgtctgctttaataactccactacatccttgaagtagctcaattgtgttagaa |
417802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 65548 - 65499
Alignment:
| Q |
129 |
ttgtggtgttccatgacaaccctaaaatttcgaaaattttaacaaagcat |
178 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
65548 |
ttgtggtgttctatgacaaccctgaaatttctaaaattttaacaaagcat |
65499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 29608646 - 29608692
Alignment:
| Q |
132 |
tggtgttccatgacaaccctaaaatttcgaaaattttaacaaagcat |
178 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||| |||| |
|
|
| T |
29608646 |
tggtgttccatgacaaccctaaaagttcgaaaattataacaacgcat |
29608692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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