View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_low_100 (Length: 255)
Name: NF4445_low_100
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_100 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 23 - 244
Target Start/End: Original strand, 41775345 - 41775566
Alignment:
| Q |
23 |
gataatgggagcatcaacatcttctgtattttacaacctaagagtgcgtcatccaacaaaagatgttccaatattggattatgatctagctcttcttttt |
122 |
Q |
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| T |
41775345 |
gataatgggagcatcaacatcttctgtattttacaacctaagagtgcgtcatccaacaaaagatgttccaatattggattatgatctagctcttcttttt |
41775444 |
T |
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| Q |
123 |
caacctatgcttatgcttggtatcactgttggtgttgctcttagtgttgttttcccttactggctcatcactgtccttatcattattctcttcataggtt |
222 |
Q |
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| T |
41775445 |
caacctatgcttatgcttggtatcactgttggtgttgctcttagtgttgttttcccttactggctcatcactgtccttatcattattctcttcataggtt |
41775544 |
T |
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| Q |
223 |
tgttactttttcttgctttcat |
244 |
Q |
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|||||||||||||||||||||| |
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| T |
41775545 |
tgttactttttcttgctttcat |
41775566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 71 - 222
Target Start/End: Complemental strand, 26958928 - 26958777
Alignment:
| Q |
71 |
tcatccaacaaaagatgttccaatattggattatgatctagctcttctttttcaacctatgcttatgcttggtatcactgttggtgttgctcttagtgtt |
170 |
Q |
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| T |
26958928 |
tcatccaacaaaacaagtgccaatattagactatgatttggctcttttgtttcagccaatgcttatgcttgggattactgttggtgttactctcagtgtt |
26958829 |
T |
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| Q |
171 |
gttttcccttactggctcatcactgtccttatcattattctcttcataggtt |
222 |
Q |
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| T |
26958828 |
gttttccctttttggcttatcactgtcctcattatcattctcttcataggtt |
26958777 |
T |
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