View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_low_102 (Length: 254)
Name: NF4445_low_102
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_102 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 22 - 239
Target Start/End: Original strand, 11172998 - 11173211
Alignment:
| Q |
22 |
atatataatatggaaaacaacattataccctccaataaacaaatttaactgaaaaatccgactcaaccgaataacttattaacttatgagtccatattca |
121 |
Q |
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| T |
11172998 |
atatataatatggaaaaca---ttataccccccaataaacaaatttaactgaaaaatccgactcaaccgaataacttattagcatatgaatccatattca |
11173094 |
T |
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| Q |
122 |
ccaatgatgagaaacaaagttttctatatgacacatacaattcaaatatgaagattccaattaacttcagcatagcacaaaggctttcactgaaggtatt |
221 |
Q |
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| T |
11173095 |
ccaatgatgagaaacaaagttttctatatgacacatacaattcaaatatgaagattccaattaacttcagcatagcacaaaggc-ttcactgaaggtatt |
11173193 |
T |
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| Q |
222 |
gttctcgaagtctatctc |
239 |
Q |
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|||||||||||||||||| |
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| T |
11173194 |
gttctcgaagtctatctc |
11173211 |
T |
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