View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_low_105 (Length: 253)
Name: NF4445_low_105
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_105 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 35630389 - 35630627
Alignment:
| Q |
1 |
gcaaatgatattgagagtttctatttaaacatactttaattgatttatcttgatatgtatggtaagaagtagcgaataatcgatgataaactgacagagg |
100 |
Q |
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| T |
35630389 |
gcaaatgatattgagagtttctatttcaacatactttaattgatttatcttgatatgtatggtaagaagtagcagataatcgatgataaactgataaaga |
35630488 |
T |
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| Q |
101 |
atgagctgagagctatattatcaaattgaatttgtaatatttaaaatnnnnnnnnttgtgtttaaatcgacggataaatatgtaattacataagaatata |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35630489 |
atgagctgagaactatattatcaaattgaatttgtaatattaaaaa---aaaaaattgtgtttgaatcgacggataaatatgtaattacataagaatata |
35630585 |
T |
|
| Q |
201 |
tttttgattcatattcaattatcgtttttgtttatatttcat |
242 |
Q |
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|| |||||||||||||||||||||||||| |||||||||||| |
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| T |
35630586 |
ttcttgattcatattcaattatcgtttttatttatatttcat |
35630627 |
T |
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