View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_low_108 (Length: 250)
Name: NF4445_low_108
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_108 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 38127025 - 38127272
Alignment:
| Q |
1 |
ccatttcaaccctgcaggccctatttatttgcaattcacatgattgttttacttttctacccaatccagccttcctttctgggagaaagaaggacatagc |
100 |
Q |
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| T |
38127025 |
ccatttcaaccctgcaggccctatttatttgcaattcacatgattgttttacttttctacccaatccagctttcctttctgggagaaagaaggacatagc |
38127124 |
T |
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| Q |
101 |
aaagacagacaatttcctatcctaggtcaagtccaagggctcaaaattagctactgtaaaactgaaagcaggtacagtgtacagttctggaaaactaaca |
200 |
Q |
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| T |
38127125 |
agagacaaacaatttcctatcctaggtcaagtccaagggctcaaaattagctactgtaaaactgaaagcaggtacagtgtacagttctggaaaactaaca |
38127224 |
T |
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| Q |
201 |
aaattaggaaagaaaagcaatgacaacagcaacgtctctgctcctcct |
248 |
Q |
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| T |
38127225 |
aaattaggaaacaaaagcaatgataacagcaacgtctcttctcatcct |
38127272 |
T |
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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 28362653 - 28362863
Alignment:
| Q |
13 |
tgcaggccctatttatttgcaattcacatgattgttttacttttctacccaatccagccttcctttctgggagaaagaaggacatagcaaagacagacaa |
112 |
Q |
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|||| ||| ||||||||||||||||||| ||| |||| |||||| || |||||||| | |||||||||| ||||||||| || ||| |||||| | ||| |
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| T |
28362653 |
tgcatgccatatttatttgcaattcacaagatagtttgactttt-tatccaatccaactttcctttctgagagaaagaaagagataacaaagagaagcaa |
28362751 |
T |
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| Q |
113 |
tttcctatcctaggtcaagtccaagggctcaaaattagctactgtaaaactgaaagcaggtacagtgtacagttctggaaaactaacaaaattaggaaag |
212 |
Q |
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| T |
28362752 |
ttttctatcccaggtcaagtccaa----ccaaaatttgatactgtaaaactgcaagatgctataatgcacaattttggaacactaacaaaattaagaaac |
28362847 |
T |
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| Q |
213 |
aaaagcaatgacaaca |
228 |
Q |
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||||||||||| |||| |
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| T |
28362848 |
aaaagcaatgataaca |
28362863 |
T |
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