View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445_low_11 (Length: 618)
Name: NF4445_low_11
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 1 - 591
Target Start/End: Complemental strand, 8464706 - 8464113
Alignment:
| Q |
1 |
acgagaagatagaacgatcagaattttttccattaaatccaattctagagcaacgcgattcaactacaagttcaccataaaatgaacttcaacaacaata |
100 |
Q |
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| T |
8464706 |
acgagaagatagaac-atcagaaatttttccattaaatccaattctagagcaacgcgattcaactacaagttcaccataaaatgaacttcaacaacaata |
8464608 |
T |
|
| Q |
101 |
gcaacataaacaaaaaagataaacaaattttcacattgagttcatccgtgcacgtccaaatttctctatatgtcctggagcgagtatatctcactaatgt |
200 |
Q |
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| T |
8464607 |
gcaacataaacaaaaaagataaataaattttcacattgagttcatccgtgcacgtcctaatttctttatatgtcctggagcgagcatatctcactaatgt |
8464508 |
T |
|
| Q |
201 |
agtgtctaattcaattggtcgcttgaaattatatagagaatttgattctcacatcatcgttgttttgaagttgcatgttgtgaatcaaacatgtccattt |
300 |
Q |
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| T |
8464507 |
agcgtctaattcaattggtcccttgaaattatatagagaatttgattctcacatcatcattgttttgaagttgcatgttgtgaatcaaacatgtccattt |
8464408 |
T |
|
| Q |
301 |
gagccgattgatagataacgatactcaacattgacctcctttctcgtgttgatatggttgaaagg---attaatatggtccaattga-ccttcaaacgag |
396 |
Q |
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|||||||||||||||||| |||||| |||||||||||| |||||||||||| ||||||||||||| |||||| |||||||||||| |||||||||||| |
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| T |
8464407 |
gagccgattgatagataaagatacttaacattgacctcatttctcgtgttgctatggttgaaaggactattaatttggtccaattgatccttcaaacgag |
8464308 |
T |
|
| Q |
397 |
acattgtaacatcgaccttattctaaattgatcgtgtttcccttttatgtggtaaaataagaagatcaattggaactaatagagtaagacgtattgtaca |
496 |
Q |
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||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8464307 |
acattgtaacatcaaccttattctaaaatgattgtgtttcccttttatgtggtaaaataagaagatcaattggaactaatagagtaagatgtattgtaca |
8464208 |
T |
|
| Q |
497 |
tctccctcccatatgcatcaagccacatggtccacataaaatggcagagctcatatatgggacgggccaacgaggtatgactcttccgcctatga |
591 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8464207 |
tctccctcccatatgcatcaagccacatggtccacatataatggcagagctcatatatgggacgggccaacaaggtatgactcttccgcctatga |
8464113 |
T |
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