View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4445_low_119 (Length: 243)

Name: NF4445_low_119
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4445_low_119
NF4445_low_119
[»] chr7 (18 HSPs)
chr7 (1-227)||(21773501-21773727)
chr7 (1-227)||(21787029-21787255)
chr7 (55-197)||(21658131-21658273)
chr7 (1-228)||(21789787-21790014)
chr7 (58-228)||(21793482-21793652)
chr7 (55-220)||(21630448-21630613)
chr7 (91-227)||(15715338-15715473)
chr7 (46-228)||(21994906-21995088)
chr7 (54-225)||(21666986-21667157)
chr7 (91-227)||(21765634-21765770)
chr7 (91-224)||(21706008-21706141)
chr7 (91-225)||(21803490-21803624)
chr7 (118-222)||(21698175-21698279)
chr7 (147-224)||(21653621-21653698)
chr7 (1-106)||(21648172-21648277)
chr7 (1-72)||(21728063-21728134)
chr7 (1-59)||(21683290-21683348)
chr7 (102-195)||(21746367-21746454)
[»] scaffold0182 (1 HSPs)
scaffold0182 (91-223)||(26978-27110)


Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 21773501 - 21773727
Alignment:
Q  1 atcataagtactgacttggtacctaatgcagacacatatttagaggttagagccaaaatacattatcattaccgtaatagatgtaatacatggatagcgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  21773501 atcataagtactgacttggtacctaatgcagacacatatttagaggttagagccaaaatacatgatcattaccgtaatagatgcaatacatggatagcgc 21773600  T
Q  101 agggttttcgcacttacttcagcagtccttgggccattattgcattcattgctgctcttatcgcgcttgttcttactttcattcagacatggtttacggt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21773601 agggttttcgcacttacttcagcagtccttgggccattattgcattcattgctgctctcatcgcgcttgttcttactttcattcagacatggtttacggt 21773700  T
Q  201 taacccgccaagcaaataaaggtggtt 227  Q
    |||||||||||||||||||||||||||    
T  21773701 taacccgccaagcaaataaaggtggtt 21773727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 21787029 - 21787255
Alignment:
Q  1 atcataagtactgacttggtacctaatgcagacacatatttagaggttagagccaaaatacattatcattaccgtaatagatgtaatacatggatagcgc 100  Q
    ||||||||||||||||||||||||||  |||| |||||||| || |||||||||||||||||| |||||||  |||||||||| ||||||||||||||      
T  21787029 atcataagtactgacttggtacctaactcagaaacatattttgaagttagagccaaaatacatgatcattattgtaatagatgcaatacatggatagcag 21787128  T
Q  101 agggttttcgcacttacttcagcagtccttgggccattattgcattcattgctgctcttatcgcgcttgttcttactttcattcagacatggtttacggt 200  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||  |||  || |||||||||||||||||||| ||||||||||||||    
T  21787129 agggttttcacacttacttcagcaatccttgggccattattgcattcattgctgcgtttactgcccttgttcttactttcattcaaacatggtttacggt 21787228  T
Q  201 taacccgccaagcaaataaaggtggtt 227  Q
    ||||||| | |||||||||||||||||    
T  21787229 taacccggctagcaaataaaggtggtt 21787255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 55 - 197
Target Start/End: Original strand, 21658131 - 21658273
Alignment:
Q  55 aaaatacattatcattaccgtaatagatgtaatacatggatagcgcagggttttcgcacttacttcagcagtccttgggccattattgcattcattgctg 154  Q
    ||||||||| |||||||| |||||| ||  ||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||    
T  21658131 aaaatacatgatcattactgtaataaatacaatacttggatagcgcagggttttcatacttacttcagcagtccttgggccattattgcattcactgctg 21658230  T
Q  155 ctcttatcgcgcttgttcttactttcattcagacatggtttac 197  Q
    |  ||||||| ||||||||||||||||||||||||||||||||    
T  21658231 cggttatcgcccttgttcttactttcattcagacatggtttac 21658273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 21789787 - 21790014
Alignment:
Q  1 atcataagtactgacttggtacctaatgcagacacatatttagaggttagagccaaaatacattatcattaccgtaatagatgtaatacatggatagcgc 100  Q
    ||||||||||||||||||||||||||| || | | |||||| || || ||||  ||||||||| | |||||| |||||| ||| || || ||||||||||    
T  21789787 atcataagtactgacttggtacctaatacaaaaatatattttgaagtcagagaaaaaatacatgagcattactgtaataaatgcaagacttggatagcgc 21789886  T
Q  101 agggttttcgcacttacttcagcagtccttgggccattattgcattcattgctgctcttatcgcgcttgttcttactttcattcagacatggtttacggt 200  Q
     |||||||| |||||||||||| | |||||||||||||||||||||| |||||||  ||||||| |||| ||| ||||||||||| ||||||||| ||||    
T  21789887 tgggttttcacacttacttcagtaatccttgggccattattgcattccttgctgcgtttatcgcccttgctctaactttcattcaaacatggtttgcggt 21789986  T
Q  201 taacccgccaagcaaataaaggtggttt 228  Q
    | ||||| |  || | ||||||||||||    
T  21789987 tgacccggcttgctagtaaaggtggttt 21790014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 58 - 228
Target Start/End: Original strand, 21793482 - 21793652
Alignment:
Q  58 atacattatcattaccgtaatagatgtaatacatggatagcgcagggttttcgcacttacttcagcagtccttgggccattattgcattcattgctgctc 157  Q
    |||||| | ||||||||||||| ||  || |  |||||||||||| |||||| |||| ||||||||| |||||||||||||| ||||||| |||||||      
T  21793482 atacataagcattaccgtaataaatacaagaattggatagcgcagcgttttcacactcacttcagcaatccttgggccattactgcattccttgctgcgt 21793581  T
Q  158 ttatcgcgcttgttcttactttcattcagacatggtttacggttaacccgccaagcaaataaaggtggttt 228  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  21793582 ttatcgcccttgctcttactttcattcagacatggtttacggttaacccaccaagaaaataaaggtggttt 21793652  T

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Target: chr7; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 55 - 220
Target Start/End: Original strand, 21630448 - 21630613
Alignment:
Q  55 aaaatacattatcattaccgtaatagatgtaatacatggatagcgcagggttttcgcacttacttcagcagtccttgggccattattgcattcattgctg 154  Q
    |||||| || |||||||| |||||| ||  || || ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  21630448 aaaataaatgatcattactgtaataaatacaagacttggatagcgcagggttttcacacttacttcaacagtccttgggccattattgcattcattgctg 21630547  T
Q  155 ctcttatcgcgcttgttcttactttcattcagacatggtttacggttaacccgccaagcaaataaa 220  Q
    |  || |||  ||||||||||||||||||||||||||||||||  || ||||| | ||||||||||    
T  21630548 cggttgtcgtccttgttcttactttcattcagacatggtttacaattcacccgactagcaaataaa 21630613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 91 - 227
Target Start/End: Original strand, 15715338 - 15715473
Alignment:
Q  91 tggatagcgcagggttttcgcacttacttcagcagtccttgggccattattgcattcattgctgctcttatcgcgcttgttcttactttcattcagacat 190  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||| |||||||  ||||||| |||| ||||||||||||||||||||    
T  15715338 tggatagcgcagggttttcacacttacttcagcaatccttgggccattactgcattccttgctgcgtttatcgcccttgctcttactttcattcagacat 15715437  T
Q  191 ggtttacggttaacccgccaagcaaataaaggtggtt 227  Q
    | ||||| ||||||||||| |||||| ||||||||||    
T  15715438 gatttactgttaacccgcctagcaaa-aaaggtggtt 15715473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 46 - 228
Target Start/End: Original strand, 21994906 - 21995088
Alignment:
Q  46 gttagagccaaaatacattatcattaccgtaatagatgtaatacatggatagcgcagggttttcgcacttacttcagcagtccttgggccattattgcat 145  Q
    ||||||||||||||| || | |||||| |||||||||| || |||||||||| |||||||||   |||||||||||||| |||||||||| | |||||||    
T  21994906 gttagagccaaaatagatgaacattactgtaatagatggaagacatggatagggcagggtttgaacacttacttcagcaatccttgggccttcattgcat 21995005  T
Q  146 tcattgctgctcttatcgcgcttgttcttactttcattcagacatggtttacggttaacccgccaagcaaataaaggtggttt 228  Q
    || |||||||  ||||||| |||| ||||||||| ||||||||||||||||| ||| | ||| | || |||||||||||||||    
T  21995006 tcgttgctgcatttatcgcccttgctcttactttaattcagacatggtttacagttcaaccggctagtaaataaaggtggttt 21995088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 54 - 225
Target Start/End: Original strand, 21666986 - 21667157
Alignment:
Q  54 caaaatacattatcattaccgtaatagatgtaatacatggatagcgcagggttttcgcacttacttcagcagtccttgggccattattgcattcattgct 153  Q
    ||||||| || | |||||| |||||| ||  || || |||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||| |||||    
T  21666986 caaaataaatgagcattactgtaataaatacaagacttggatagcacagggttttcacacttacttcagcagtccttgggccattactgcattccttgct 21667085  T
Q  154 gctcttatcgcgcttgttcttactttcattcagacatggtttacggttaacccgccaagcaaataaaggtgg 225  Q
    ||  |||||||  |||||||||||||||||||||||||||||||| || ||||| |  || |||||||||||    
T  21667086 gcgtttatcgccattgttcttactttcattcagacatggtttacgattcacccggcttgctaataaaggtgg 21667157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 91 - 227
Target Start/End: Original strand, 21765634 - 21765770
Alignment:
Q  91 tggatagcgcagggttttcgcacttacttcagcagtccttgggccattattgcattcattgctgctcttatcgcgcttgttcttactttcattcagacat 190  Q
    |||||||||| |||||||||||||||||||| || ||||||| || ||||||| ||| |||||||  |||  || |||| ||||||||||||||||||||    
T  21765634 tggatagcgctgggttttcgcacttacttcaacaatccttggaccgttattgccttccttgctgcatttactgcccttgctcttactttcattcagacat 21765733  T
Q  191 ggtttacggttaacccgccaagcaaataaaggtggtt 227  Q
    ||||||||||| ||||| | ||||||||| |||||||    
T  21765734 ggtttacggttcacccggctagcaaataatggtggtt 21765770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 91 - 224
Target Start/End: Original strand, 21706008 - 21706141
Alignment:
Q  91 tggatagcgcagggttttcgcacttacttcagcagtccttgggccattattgcattcattgctgctcttatcgcgcttgttcttactttcattcagacat 190  Q
    |||||||||| ||||||||| |||||||| | || |||||||||| ||||||| ||| |||||||| |||  || |||| ||||||||||||||||||||    
T  21706008 tggatagcgctgggttttcgtacttacttaaacaatccttgggccgttattgccttccttgctgcttttactgcccttgctcttactttcattcagacat 21706107  T
Q  191 ggtttacggttaacccgccaagcaaataaaggtg 224  Q
    ||||||| ||| ||||| | | ||||||||||||    
T  21706108 ggtttacagttcacccggctaacaaataaaggtg 21706141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 91 - 225
Target Start/End: Complemental strand, 21803624 - 21803490
Alignment:
Q  91 tggatagcgcagggttttcgcacttacttcagcagtccttgggccattattgcattcattgctgctcttatcgcgcttgttcttactttcattcagacat 190  Q
    |||||||||  |||||||||||||||||||| || ||||||| |||||||||||||| |||||||  |||| || || | ||||||||||||||||||||    
T  21803624 tggatagcgttgggttttcgcacttacttcaacaatccttggaccattattgcattccttgctgcatttattgccctcgctcttactttcattcagacat 21803525  T
Q  191 ggtttacggttaacccgccaagcaaataaaggtgg 225  Q
     ||||||  || ||||| | |||| ||||||||||    
T  21803524 tgtttacaattcacccgactagcacataaaggtgg 21803490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 21698175 - 21698279
Alignment:
Q  118 ttcagcagtccttgggccattattgcattcattgctgctcttatcgcgcttgttcttactttcattcagacatggtttacggttaacccgccaagcaaat 217  Q
    ||||||||||||||| ||||||||||||||| ||||||   |||||| |||||||||||| |||||||||||| ||||||| || ||||| |  ||||||    
T  21698175 ttcagcagtccttggaccattattgcattcagtgctgcgtctatcgcccttgttcttactctcattcagacattgtttacgattcacccggcttgcaaat 21698274  T
Q  218 aaagg 222  Q
    |||||    
T  21698275 aaagg 21698279  T

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Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 21653621 - 21653698
Alignment:
Q  147 cattgctgctcttatcgcgcttgttcttactttcattcagacatggtttacggttaacccgccaagcaaataaaggtg 224  Q
    |||||||||  ||||||| |||| ||||||||||||||||||||||||||||||| ||||||| | ||||||||||||    
T  21653621 cattgctgcggttatcgcccttgctcttactttcattcagacatggtttacggtttacccgcctaacaaataaaggtg 21653698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 21648172 - 21648277
Alignment:
Q  1 atcataagtactgacttggtacctaatgcagacacatattt-agaggttagagccaaaatacattatcattaccgtaatagatgtaatacatggatagcg 99  Q
    |||||| |||| |||||| |||||||| |||| |||||||| |||| |||||||||||||| |||||||||||||||||| ||| || || ||||||| |    
T  21648172 atcataggtaccgacttgatacctaatacagaaacatatttcagag-ttagagccaaaatagattatcattaccgtaataaatgcaagacttggatagtg 21648270  T
Q  100 cagggtt 106  Q
    | |||||    
T  21648271 ctgggtt 21648277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 21728063 - 21728134
Alignment:
Q  1 atcataagtactgacttggtacctaatgcagacacatatttagaggttagagccaaaatacattatcattac 72  Q
    ||||||||||||||||||||||||||  |||| |||||||| || |||| || |||||| | | ||||||||    
T  21728063 atcataagtactgacttggtacctaacacagaaacatattttgaagttaaagacaaaatgcttgatcattac 21728134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 21683290 - 21683348
Alignment:
Q  1 atcataagtactgacttggtacctaatgcagacacatatttagaggttagagccaaaat 59  Q
    |||||| |||||||||||||||||||  |||| |||||||| || |||| |||||||||    
T  21683290 atcataggtactgacttggtacctaacccagaaacatattttgaagttaaagccaaaat 21683348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 21746367 - 21746454
Alignment:
Q  102 gggttttcgcacttacttcagcagtccttgggccattattgcattcattgctgctcttatcgcgcttgttcttactttcattcagacatggttt 195  Q
    ||||||| |||||||||||| || |||||||||| ||||||||||| || ||||  |||| || ||||      ||||||||||||||||||||    
T  21746367 gggtttttgcacttacttcaacaatccttgggccgttattgcattcgttcctgcatttattgcccttg------ctttcattcagacatggttt 21746454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 91 - 223
Target Start/End: Original strand, 26978 - 27110
Alignment:
Q  91 tggatagcgcagggttttcgcacttacttcagcagtccttgggccattattgcattcattgctgctcttatcgcgcttgttcttactttcattcagacat 190  Q
    |||||||||  |||||||||||||||||||| || ||||||| || ||||||||||| ||| |||  |||  || |||| ||||||||||||||||||||    
T  26978 tggatagcgttgggttttcgcacttacttcaacaatccttggaccgttattgcattccttgttgcatttactgcccttgctcttactttcattcagacat 27077  T
Q  191 ggtttacggttaacccgccaagcaaataaaggt 223  Q
    ||||||||||| ||||| | |||||||||||||    
T  27078 ggtttacggttcacccggctagcaaataaaggt 27110  T

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